Variant report

Variant	rs191011714
Chromosome Location	chr6:28412718-28412719
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr6:28412661-28412916	HepG2	liver:	n/a	chr6:28412770-28412785 chr6:28412795-28412810
2	MAFK	chr6:28412660-28412911	IMR90	lung:	n/a	chr6:28412770-28412785 chr6:28412795-28412810
3	CHD2	chr6:28412552-28412746	H1-hESC	embryonic stem cell:	n/a	n/a
4	SP1	chr6:28412427-28412960	H1-hESC	embryonic stem cell:	n/a	n/a
5	MAFF	chr6:28412702-28412917	HepG2	liver:	n/a	n/a
6	SP1	chr6:28412596-28412906	GM12878	blood:	n/a	n/a
7	SP1	chr6:28412605-28412994	GM12878	blood:	n/a	n/a
8	NFYA	chr6:28412506-28412994	K562	blood:	n/a	chr6:28412704-28412722
9	NFYB	chr6:28412498-28413030	GM12878	blood:	n/a	chr6:28412801-28412816 chr6:28412842-28412857
10	MAFK	chr6:28412689-28412903	HepG2	liver:	n/a	chr6:28412770-28412785 chr6:28412795-28412810
11	NFYB	chr6:28412553-28412988	Hela-S3	cervix:	n/a	chr6:28412801-28412816 chr6:28412842-28412857
12	SETDB1	chr6:28412478-28412849	U2OS	brain:	n/a	n/a
13	SP1	chr6:28412442-28413011	H1-hESC	embryonic stem cell:	n/a	n/a
14	SP1	chr6:28412524-28413043	K562	blood:	n/a	n/a
15	POLR2A	chr6:28411913-28412722	K562	blood:	n/a	n/a
16	NFYB	chr6:28412481-28413015	K562	blood:	n/a	chr6:28412801-28412816 chr6:28412842-28412857

Variant related genes	Relation type
COX11P1	TF binding region
ZSCAN23	TF binding region

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3419537	chr6:28412323-28414271	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28411600-28414400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:28411600-28414400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:28411600-28414400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:28411600-28414600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:28411600-28414600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:28411600-28414600	Weak transcription	NHLF	lung
7	chr6:28411600-28414800	Weak transcription	Aorta	Aorta
8	chr6:28411600-28414800	Weak transcription	Pancreas	Pancrea
9	chr6:28411800-28412800	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr6:28411800-28414000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr6:28411800-28414200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr6:28411800-28414400	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr6:28411800-28414400	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr6:28411800-28414400	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr6:28411800-28414400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr6:28411800-28414400	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr6:28411800-28414400	Weak transcription	NH-A	brain
18	chr6:28411800-28414400	Weak transcription	Osteobl	bone
19	chr6:28411800-28414600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr6:28411800-28414600	Weak transcription	Right Ventricle	heart
21	chr6:28411800-28414600	Weak transcription	HSMM	muscle
22	chr6:28411800-28414600	Weak transcription	HSMMtube	muscle
23	chr6:28412000-28414400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr6:28412000-28414400	Weak transcription	HMEC	breast
25	chr6:28412000-28414600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr6:28412000-28414600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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