Variant report

Variant	rs191032156
Chromosome Location	chr10:52391941-52391942
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:52389046..52395992-chr10:52408718..52416095,10	K562	blood:
2	chr10:52364376..52366700-chr10:52391837..52394497,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ASAH2B-2	chr10:52389337-52401211	ENSG00000226200.2

Variant related genes	Relation type
ENSG00000231345	Chromatin interaction
ENSG00000230036	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054775	chr10:51595893-52392361	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1051087	chr10:51886486-52447295	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv916214	chr10:51886486-52458983	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv918212	chr10:51886486-52465482	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv817412	chr10:51911034-52432990	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv469522	chr10:52276564-52447589	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
7	nsv482564	chr10:52276564-52447589	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
8	nsv442182	chr10:52391456-52393828	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52385400-52392400	Weak transcription	Lung	lung
2	chr10:52385600-52392200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:52385600-52392200	Weak transcription	Left Ventricle	heart
4	chr10:52385600-52392400	Weak transcription	Gastric	stomach
5	chr10:52385600-52393000	Weak transcription	Pancreas	Pancrea
6	chr10:52385600-52393600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr10:52385600-52395200	Weak transcription	Esophagus	oesophagus
8	chr10:52385800-52392800	Weak transcription	Aorta	Aorta
9	chr10:52385800-52394800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr10:52385800-52395000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr10:52385800-52396000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr10:52385800-52396800	Weak transcription	Fetal Brain Male	brain
13	chr10:52385800-52397000	Weak transcription	Psoas Muscle	Psoas
14	chr10:52385800-52397000	Weak transcription	Small Intestine	intestine
15	chr10:52386000-52392200	Weak transcription	Fetal Stomach	stomach
16	chr10:52386000-52392200	Weak transcription	Stomach Smooth Muscle	stomach
17	chr10:52386000-52392400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr10:52386000-52392400	Weak transcription	Fetal Intestine Small	intestine
19	chr10:52386000-52393400	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr10:52386000-52394600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr10:52386000-52394800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr10:52386000-52394800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr10:52386000-52394800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr10:52386000-52394800	Weak transcription	HSMM	muscle
25	chr10:52386000-52395000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr10:52386000-52395200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr10:52386000-52395800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr10:52386000-52396000	Weak transcription	Primary hematopoietic stem cells	blood
29	chr10:52386000-52397000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr10:52386000-52400400	Weak transcription	Fetal Lung	lung
31	chr10:52386200-52396200	Weak transcription	Primary B cells from cord blood	blood
32	chr10:52386200-52396200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr10:52386400-52393600	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr10:52388200-52394600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr10:52388400-52394600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr10:52389600-52396000	Weak transcription	GM12878-XiMat	blood
37	chr10:52389800-52394400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr10:52390200-52392000	Weak transcription	Adipose Nuclei	Adipose
39	chr10:52390200-52394000	Weak transcription	Brain Anterior Caudate	brain
40	chr10:52390200-52394200	Weak transcription	Ovary	ovary
41	chr10:52390200-52397000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr10:52390200-52397000	Weak transcription	Brain Hippocampus Middle	brain
43	chr10:52390400-52392000	Weak transcription	Fetal Muscle Leg	muscle
44	chr10:52390400-52393800	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr10:52390600-52392600	Weak transcription	Fetal Intestine Large	intestine
46	chr10:52390800-52392800	Weak transcription	Liver	Liver
47	chr10:52390800-52396600	Weak transcription	Primary B cells from peripheral blood	blood

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