Variant report

Variant	rs191054450
Chromosome Location	chr4:7951011-7951012
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:7940858..7944255-chr4:7948731..7952415,4	MCF-7	breast:
2	chr4:7948820..7951616-chr4:7956556..7958489,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196526	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491712	chr4:7582506-8155069	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv34140	chr4:7787936-8172491	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	esv2754386	chr4:7822449-7992909	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2756298	chr4:7822449-7992909	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv878578	chr4:7841833-7969594	Enhancers Flanking Active TSS Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv593621	chr4:7943106-7969594	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv20550	chr4:7950857-7951577	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7941600-7951200	Weak transcription	Small Intestine	intestine
2	chr4:7942000-7951400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:7945400-7957400	Weak transcription	Placenta	Placenta
4	chr4:7949000-7952400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:7949800-7951600	Enhancers	Fetal Brain Male	brain
6	chr4:7950000-7951200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr4:7950400-7951200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:7950400-7951400	Enhancers	Pancreas	Pancrea
9	chr4:7950400-7951600	Enhancers	Duodenum Mucosa	Duodenum
10	chr4:7950400-7951800	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr4:7950400-7951800	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr4:7950400-7951800	Enhancers	Fetal Intestine Large	intestine
13	chr4:7950400-7951800	Enhancers	Fetal Intestine Small	intestine
14	chr4:7950600-7951200	Enhancers	Ovary	ovary
15	chr4:7950600-7951200	Flanking Active TSS	Stomach Smooth Muscle	stomach
16	chr4:7950600-7951200	Enhancers	Osteobl	bone
17	chr4:7950600-7951600	Enhancers	Colon Smooth Muscle	Colon
18	chr4:7950600-7951600	Enhancers	Rectal Smooth Muscle	rectum
19	chr4:7950600-7952000	Enhancers	Stomach Mucosa	stomach
20	chr4:7950600-7952600	Bivalent Enhancer	HepG2	liver
21	chr4:7950800-7951400	Enhancers	Liver	Liver
22	chr4:7951000-7951200	Flanking Active TSS	Fetal Heart	heart
23	chr4:7951000-7951200	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr4:7951000-7951400	Enhancers	Fetal Brain Female	brain
25	chr4:7951000-7951600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links