Variant report

Variant	rs191084436
Chromosome Location	chr6:149498492-149498493
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BHLHE40	chr6:149498199-149498559	HepG2	liver:	n/a	n/a
2	FOXA1	chr6:149497938-149498772	HepG2	liver:	n/a	n/a
3	TEAD4	chr6:149497942-149498614	HepG2	liver:	n/a	n/a
4	FOXA1	chr6:149497954-149498716	HepG2	liver:	n/a	n/a
5	EP300	chr6:149498015-149498557	HepG2	liver:	n/a	n/a
6	NFIC	chr6:149497965-149498684	HepG2	liver:	n/a	n/a
7	TCF12	chr6:149498145-149498502	HepG2	liver:	n/a	n/a
8	FOXA2	chr6:149498040-149498623	HepG2	liver:	n/a	n/a
9	NFIC	chr6:149498082-149498518	HepG2	liver:	n/a	n/a
10	FOXA1	chr6:149498075-149498722	HepG2	liver:	n/a	n/a
11	HNF4G	chr6:149498194-149498498	HepG2	liver:	n/a	chr6:149498348-149498364
12	ZBTB33	chr6:149498017-149498563	HepG2	liver:	n/a	n/a
13	HDAC2	chr6:149498093-149498535	HepG2	liver:	n/a	chr6:149498368-149498382 chr6:149498366-149498380 chr6:149498364-149498378
14	FOXA1	chr6:149498059-149498696	HepG2	liver:	n/a	n/a
15	FOXA2	chr6:149497498-149498960	HepG2	liver:	n/a	n/a
16	JUND	chr6:149498267-149498570	HepG2	liver:	n/a	n/a
17	ARID3A	chr6:149497988-149498629	HepG2	liver:	n/a	n/a
18	REST	chr6:149498083-149498550	HepG2	liver:	n/a	chr6:149498286-149498306 chr6:149498286-149498306
19	RXRA	chr6:149498117-149498570	HepG2	liver:	n/a	n/a
20	TCF7L2	chr6:149498107-149498568	HepG2	liver:	n/a	n/a
21	HDAC2	chr6:149498027-149498601	HepG2	liver:	n/a	chr6:149498368-149498382 chr6:149498366-149498380 chr6:149498364-149498378
22	MYBL2	chr6:149497920-149498744	HepG2	liver:	n/a	n/a
23	NR2F2	chr6:149497988-149498712	HepG2	liver:	n/a	n/a
24	NR2F2	chr6:149498020-149498520	HepG2	liver:	n/a	n/a
25	EP300	chr6:149498123-149498628	HepG2	liver:	n/a	n/a
26	RAD21	chr6:149498254-149498579	HepG2	liver:	n/a	n/a
27	SP1	chr6:149498093-149498530	HepG2	liver:	n/a	n/a
28	MYBL2	chr6:149497970-149498615	HepG2	liver:	n/a	n/a
29	MBD4	chr6:149498058-149498624	HepG2	liver:	n/a	n/a
30	MBD4	chr6:149498018-149498589	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ENSG00000263481	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	esv3407275	chr6:149498209-149500207	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	esv2466757	chr6:149498326-149499898	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149492200-149503600	Weak transcription	Right Atrium	heart
2	chr6:149497800-149498600	Bivalent Enhancer	HepG2	liver
3	chr6:149498200-149498600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr6:149498200-149498600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:149498200-149498600	Flanking Active TSS	Liver	Liver
6	chr6:149498200-149498600	Enhancers	Brain Angular Gyrus	brain
7	chr6:149498200-149498600	Enhancers	Brain Hippocampus Middle	brain
8	chr6:149498200-149498800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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