Variant report

Variant	rs1911216
Chromosome Location	chr14:82899333-82899334
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11159543	1.00[AFR][1000 genomes]
rs11159544	1.00[AFR][1000 genomes]
rs17094268	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17116738	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17116744	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17116747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17116760	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17668120	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052666	chr14:82069162-83028382	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1051581	chr14:82829319-83051904	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv832842	chr14:82871181-83054768	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:82897400-82899800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr14:82897400-82899800	Enhancers	Brain Germinal Matrix	brain
3	chr14:82897400-82900800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr14:82897800-82900800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr14:82898000-82899600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr14:82898200-82899400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr14:82898200-82899600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr14:82898200-82899600	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr14:82898600-82899400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr14:82898600-82899400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr14:82899000-82899400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr14:82899000-82899400	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr14:82899000-82900200	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr14:82899200-82899600	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr14:82899200-82899600	Enhancers	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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