Variant report

Variant	rs191148540
Chromosome Location	chr10:4290860-4290861
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr10:4290829-4290961	GM19240	blood:	n/a	chr10:4290882-4290903
2	CTCF	chr10:4290848-4290968	NHEK	skin:	n/a	chr10:4290882-4290903
3	CTCF	chr10:4290826-4290944	GM19238	blood:	n/a	chr10:4290882-4290903
4	CTCF	chr10:4290809-4290943	Spleen_OC	spleen:	n/a	chr10:4290882-4290903
5	CTCF	chr10:4290801-4290982	GM19239	blood:	n/a	chr10:4290882-4290903

Variant related genes	Relation type
LINC00702	TF binding region

Extended variants
information (count: 114 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:114 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799113	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1800792	chr10:4259123-4332824	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1820112	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1822419	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1839293	chr10:4259123-4332824	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv1841782	chr10:4259123-4332824	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1044535	chr10:4271872-4306421	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1051538	chr10:4274395-4291004	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1053322	chr10:4279301-4306798	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1052378	chr10:4286880-4307024	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv1043787	chr10:4286880-4307322	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv1036103	chr10:4286880-4311792	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	esv2757363	chr10:4286880-4323493	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	esv2759728	chr10:4286880-4323493	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	esv3317084	chr10:4288052-4293650	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	esv1800898	chr10:4288645-4291584	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
17	esv1821878	chr10:4288645-4291584	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
18	esv1839878	chr10:4288645-4291584	Weak transcription Flanking Active TSS Enhancers Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
19	esv3346302	chr10:4288902-4292800	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
20	esv3318195	chr10:4288977-4292925	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
21	esv3341959	chr10:4289352-4292700	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
22	nsv549858	chr10:4289489-4291584	Weak transcription Flanking Active TSS Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
23	nsv8597	chr10:4289599-4292525	Weak transcription Enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
24	esv3311529	chr10:4289675-4291974	Weak transcription Enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
25	esv1799522	chr10:4289738-4291584	Weak transcription Enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
26	esv1821991	chr10:4289738-4291584	Flanking Active TSS Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
27	nsv511452	chr10:4289738-4294071	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
28	esv7613	chr10:4289832-4291914	Weak transcription Enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
29	esv3315973	chr10:4289852-4292200	Enhancers Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
30	nsv512139	chr10:4289921-4291859	Weak transcription Enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
31	esv3320417	chr10:4289933-4291786	Enhancers Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
32	esv3506156	chr10:4289962-4291781	Enhancers Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
33	esv3357483	chr10:4289968-4291786	Enhancers Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
34	nsv825217	chr10:4289974-4291125	Weak transcription Flanking Active TSS Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
35	nsv821193	chr10:4289974-4291825	Weak transcription Enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
36	nsv825218	chr10:4289974-4291825	Enhancers Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
37	esv3506159	chr10:4289975-4291724	Weak transcription Enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
38	esv3506158	chr10:4289977-4291714	Enhancers Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
39	esv3312640	chr10:4289984-4291752	Enhancers Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
40	esv3313751	chr10:4289990-4291750	Enhancers Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
41	esv3314862	chr10:4289997-4291704	Flanking Active TSS Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
42	esv3506160	chr10:4290005-4291733	Enhancers Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
43	esv3506157	chr10:4290007-4291732	Enhancers Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
44	esv3803	chr10:4290012-4291758	Enhancers Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
45	esv3447992	chr10:4290025-4291703	Enhancers Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
46	esv3319306	chr10:4290048-4291688	Enhancers Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
47	esv3506155	chr10:4290059-4291686	Weak transcription Enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
48	esv1619476	chr10:4290063-4291683	Weak transcription Enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
49	esv3321529	chr10:4290063-4291684	Weak transcription Enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
50	esv3506161	chr10:4290063-4291684	Enhancers Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4276000-4292200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:4285200-4291800	Weak transcription	Psoas Muscle	Psoas
3	chr10:4285600-4296200	Weak transcription	Fetal Muscle Leg	muscle
4	chr10:4286000-4292400	Weak transcription	Right Ventricle	heart
5	chr10:4286000-4294800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr10:4286800-4296200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr10:4288400-4291000	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr10:4288600-4291800	Weak transcription	Aorta	Aorta
9	chr10:4289000-4293000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr10:4289400-4301400	Weak transcription	Stomach Smooth Muscle	stomach
11	chr10:4289600-4296400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr10:4289800-4291600	Weak transcription	Rectal Smooth Muscle	rectum
13	chr10:4289800-4291800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr10:4290000-4291600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr10:4290000-4291600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr10:4290000-4291600	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr10:4290000-4291600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr10:4290000-4291600	Weak transcription	NH-A	brain
19	chr10:4290000-4291600	Weak transcription	NHLF	lung
20	chr10:4290000-4291800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr10:4290000-4291800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr10:4290000-4291800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr10:4290000-4291800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr10:4290000-4292200	Weak transcription	Hela-S3	cervix
25	chr10:4290000-4297800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr10:4290200-4291600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr10:4290200-4291600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr10:4290200-4291600	Weak transcription	HMEC	breast
29	chr10:4290200-4291600	Weak transcription	NHDF-Ad	bronchial
30	chr10:4290200-4291600	Weak transcription	NHEK	skin
31	chr10:4290200-4291600	Weak transcription	Osteobl	bone

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