Variant report

Variant	rs191164
Chromosome Location	chr5:92921607-92921608
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CHD2	chr5:92920668-92922079	Hela-S3	cervix:	n/a	chr5:92920697-92920707
2	CEBPB	chr5:92921534-92922111	Hela-S3	cervix:	n/a	n/a
3	POLR2A	chr5:92919425-92922226	Hela-S3	cervix:	n/a	n/a
4	MXI1	chr5:92917513-92922404	SK-N-SH	brain:	n/a	chr5:92918848-92918863
5	SMARCB1	chr5:92920682-92921632	Hela-S3	cervix:	n/a	n/a
6	POLR2A	chr5:92921396-92922629	H1-neurons	neurons:	n/a	n/a
7	POLR2A	chr5:92921356-92921996	SK-N-SH	brain:	n/a	n/a
8	CTBP2	chr5:92919429-92921750	H1-hESC	embryonic stem cell:	n/a	n/a
9	POLR2A	chr5:92920719-92921938	HepG2	liver:	n/a	n/a
10	POLR2A	chr5:92919701-92921892	HEK293	kidney:	n/a	n/a
11	POLR2A	chr5:92921494-92922015	Hela-S3	cervix:	n/a	n/a
12	POLR2A	chr5:92921352-92922222	U87	brain:	n/a	n/a
13	EP300	chr5:92921593-92921922	SK-N-SH_RA	brain:	n/a	n/a
14	POLR2A	chr5:92918332-92922151	Hela-S3	cervix:	n/a	n/a
15	TBP	chr5:92921529-92922133	Hela-S3	cervix:	n/a	n/a
16	CHD1	chr5:92912776-92927520	IMR90	lung:	n/a	chr5:92914877-92914887 chr5:92926304-92926314 chr5:92917311-92917321 chr5:92918655-92918665 chr5:92918684-92918694 chr5:92920697-92920707 chr5:92920384-92920394 chr5:92915468-92915478 chr5:92917327-92917337 chr5:92920376-92920386
17	MAX	chr5:92920694-92922174	Hela-S3	cervix:	n/a	n/a
18	POLR2A	chr5:92921355-92921858	U87	brain:	n/a	n/a
19	POLR2A	chr5:92921442-92922336	H1-neurons	neurons:	n/a	n/a
20	EP300	chr5:92921592-92921873	SK-N-SH_RA	brain:	n/a	n/a
21	BRCA1	chr5:92921519-92921687	Hela-S3	cervix:	n/a	n/a
22	E2F4	chr5:92921577-92921655	MCF10A-Er-Src	breast:	n/a	n/a
23	RAD21	chr5:92920966-92922101	IMR90	lung:	n/a	chr5:92921377-92921396
24	SMC3	chr5:92921500-92922061	Hela-S3	cervix:	n/a	n/a
25	ZNF263	chr5:92920899-92922197	HEK293-T-REx	kidney:	n/a	n/a
26	BACH1	chr5:92921407-92921738	H1-hESC	embryonic stem cell:	n/a	n/a
27	RCOR1	chr5:92921279-92922061	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:92914959..92917781-chr5:92918156..92922060,3	MCF-7	breast:

Variant related genes	Relation type
NR2F1-AS1	TF binding region
NR2F1	TF binding region
ENSG00000237187	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3451945	chr5:92858750-93024740	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv830404	chr5:92868336-93048257	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	esv1819334	chr5:92892591-92956733	Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv882383	chr5:92895401-92928346	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv823130	chr5:92896346-92966016	Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	nsv4918	chr5:92898426-92943359	Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv823132	chr5:92898512-92969668	Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
8	esv3423958	chr5:92919096-92921969	Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
9	esv3468495	chr5:92919221-92922169	Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
10	esv3468497	chr5:92919221-92922169	Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
11	esv1794960	chr5:92919821-92932305	Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	esv1837322	chr5:92919821-92933747	Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	nsv598949	chr5:92920115-92922781	Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92913800-92923200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr5:92914000-92925800	Active TSS	Brain Angular Gyrus	brain
3	chr5:92914200-92926200	Active TSS	Fetal Brain Female	brain
4	chr5:92914400-92922200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:92914400-92922800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr5:92914600-92924600	Active TSS	HSMM	muscle
7	chr5:92914600-92924800	Active TSS	Right Atrium	heart
8	chr5:92914800-92921800	Active TSS	Psoas Muscle	Psoas
9	chr5:92914800-92921800	Active TSS	Osteobl	bone
10	chr5:92914800-92923200	Active TSS	Ovary	ovary
11	chr5:92914800-92926000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
12	chr5:92915000-92922200	Active TSS	HSMMtube	muscle
13	chr5:92915200-92923200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr5:92915200-92923600	Active TSS	NH-A	brain
15	chr5:92916200-92927600	Active TSS	Brain Inferior Temporal Lobe	brain
16	chr5:92916400-92923200	Active TSS	Fetal Adrenal Gland	Adrenal Gland
17	chr5:92916400-92923400	Active TSS	Stomach Smooth Muscle	stomach
18	chr5:92916400-92925200	Active TSS	Brain Substantia Nigra	brain
19	chr5:92918000-92925000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr5:92918400-92921800	Active TSS	A549	lung
21	chr5:92918400-92922600	Active TSS	Hela-S3	cervix
22	chr5:92919000-92922000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
23	chr5:92919000-92923400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr5:92919600-92921800	Bivalent/Poised TSS	Esophagus	oesophagus
25	chr5:92919800-92925400	Active TSS	Brain Germinal Matrix	brain
26	chr5:92920600-92921800	Bivalent/Poised TSS	Primary B cells from cord blood	blood
27	chr5:92920600-92921800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
28	chr5:92920600-92924600	Active TSS	Fetal Kidney	kidney
29	chr5:92920800-92922000	Transcr. at gene 5' and 3'	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr5:92920800-92922200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
31	chr5:92920800-92922200	Active TSS	NHDF-Ad	bronchial
32	chr5:92920800-92922400	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
33	chr5:92920800-92929400	Transcr. at gene 5' and 3'	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr5:92921000-92921800	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
35	chr5:92921000-92921800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
36	chr5:92921000-92921800	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
37	chr5:92921000-92921800	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
38	chr5:92921000-92921800	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr5:92921000-92921800	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
40	chr5:92921000-92921800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
41	chr5:92921000-92921800	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
42	chr5:92921000-92922000	Bivalent/Poised TSS	Primary T cells from cord blood	blood
43	chr5:92921000-92922000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
44	chr5:92921000-92922000	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
45	chr5:92921000-92922000	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
46	chr5:92921000-92922000	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
47	chr5:92921000-92922000	Bivalent/Poised TSS	Small Intestine	intestine
48	chr5:92921000-92922000	Bivalent/Poised TSS	HepG2	liver
49	chr5:92921000-92922200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr5:92921000-92922200	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links