Variant report

Variant	rs191275841
Chromosome Location	chr13:30880639-30880640
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:30880213..30882773-chr13:31038194..31039987,2	K562	blood:

Variant related genes	Relation type
ENSG00000189403	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3327826	chr13:30880377-30882925	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30861000-30880800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:30866800-30880800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr13:30868400-30880800	Weak transcription	Left Ventricle	heart
4	chr13:30876400-30880800	Weak transcription	Lung	lung
5	chr13:30877800-30880800	Weak transcription	Spleen	Spleen
6	chr13:30878800-30880800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr13:30879400-30880800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr13:30879400-30881000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr13:30879600-30881000	Flanking Active TSS	Adipose Nuclei	Adipose
10	chr13:30879600-30881000	Flanking Active TSS	HUVEC	blood vessel
11	chr13:30879600-30881600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr13:30879600-30882000	Active TSS	A549	lung
13	chr13:30879800-30880800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr13:30879800-30882000	Active TSS	Fetal Thymus	thymus
15	chr13:30879800-30882200	Active TSS	HUES48 Cell Line	embryonic stem cell
16	chr13:30879800-30882200	Active TSS	HUES6 Cell Line	embryonic stem cell
17	chr13:30879800-30882200	Active TSS	Psoas Muscle	Psoas
18	chr13:30879800-30882400	Active TSS	ES-I3 Cell Line	embryonic stem cell
19	chr13:30879800-30882400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr13:30880000-30881000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr13:30880000-30881200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr13:30880000-30881800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr13:30880000-30881800	Active TSS	HMEC	breast
24	chr13:30880000-30882000	Active TSS	Colon Smooth Muscle	Colon
25	chr13:30880000-30882000	Active TSS	Thymus	Thymus
26	chr13:30880000-30882000	Active TSS	NH-A	brain
27	chr13:30880000-30882000	Active TSS	NHLF	lung
28	chr13:30880000-30882200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr13:30880000-30882200	Active TSS	Fetal Brain Female	brain
30	chr13:30880000-30882400	Active TSS	iPS-20b Cell Line	embryonic stem cell
31	chr13:30880000-30882800	Active TSS	Brain Inferior Temporal Lobe	brain
32	chr13:30880200-30880800	Active TSS	Brain Germinal Matrix	brain
33	chr13:30880200-30881800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr13:30880200-30881800	Active TSS	GM12878-XiMat	blood
35	chr13:30880200-30882000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr13:30880200-30882000	Active TSS	Muscle Satellite Cultured Cells	--
37	chr13:30880200-30882000	Active TSS	Duodenum Smooth Muscle	Duodenum
38	chr13:30880200-30882200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr13:30880200-30882200	Active TSS	Fetal Stomach	stomach
40	chr13:30880200-30882200	Active TSS	NHDF-Ad	bronchial
41	chr13:30880200-30883000	Active TSS	K562	blood
42	chr13:30880400-30880800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
43	chr13:30880400-30880800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
44	chr13:30880400-30880800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
45	chr13:30880400-30880800	Enhancers	Primary T killer memory cells from peripheral blood	blood
46	chr13:30880400-30880800	Flanking Active TSS	HepG2	liver
47	chr13:30880400-30881000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr13:30880400-30881000	Flanking Active TSS	Brain Anterior Caudate	brain
49	chr13:30880400-30881000	Flanking Active TSS	Fetal Muscle Leg	muscle
50	chr13:30880400-30881000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle

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