The 2.0 version of rSNPBase

Variant report

Variant rs191284335
Chromosome Location chr13:49087359-49087360
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:84 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr13:49054000-49094000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr13:49063000-49087800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
3 chr13:49067200-49105200 Weak transcription Duodenum Smooth Muscle Duodenum
4 chr13:49067200-49105400 Weak transcription Rectal Smooth Muscle rectum
5 chr13:49067800-49098000 Weak transcription Right Ventricle heart
6 chr13:49068000-49105600 Weak transcription Gastric stomach
7 chr13:49068200-49102600 Weak transcription Rectal Mucosa Donor 31 rectum
8 chr13:49071200-49105600 Weak transcription Fetal Brain Male brain
9 chr13:49071800-49105800 Weak transcription iPS-18 Cell Line embryonic stem cell
10 chr13:49072000-49088400 Weak transcription iPS-20b Cell Line embryonic stem cell
11 chr13:49072200-49095600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
12 chr13:49073600-49087800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
13 chr13:49075600-49093400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
14 chr13:49075600-49095200 Weak transcription Fetal Intestine Large intestine
15 chr13:49075800-49088400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
16 chr13:49075800-49093200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
17 chr13:49076600-49097400 Weak transcription Pancreas Pancrea
18 chr13:49079600-49091000 Weak transcription HUES6 Cell Line embryonic stem cell
19 chr13:49079600-49092200 Weak transcription HUES48 Cell Line embryonic stem cell
20 chr13:49080600-49087800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
21 chr13:49080600-49105600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
22 chr13:49080800-49087400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
23 chr13:49080800-49102200 Weak transcription Primary T regulatory cells fromperipheralblood blood
24 chr13:49080800-49105400 Weak transcription Duodenum Mucosa Duodenum
25 chr13:49081000-49090200 Weak transcription HSMM muscle
26 chr13:49081400-49088600 Weak transcription Primary hematopoietic stem cells blood
27 chr13:49081400-49105600 Weak transcription Placenta Placenta
28 chr13:49081600-49088000 Weak transcription Primary T helper naive cells fromperipheralblood blood
29 chr13:49083400-49094400 Weak transcription Fetal Intestine Small intestine
30 chr13:49083400-49095800 Weak transcription Spleen Spleen
31 chr13:49083800-49105600 Weak transcription Esophagus oesophagus
32 chr13:49085000-49088400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
33 chr13:49085000-49091200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
34 chr13:49085000-49096000 Strong transcription Monocytes-CD14+_RO01746 blood
35 chr13:49085000-49096600 Weak transcription Small Intestine intestine
36 chr13:49085000-49104800 Weak transcription Primary T helper cells fromperipheralblood blood
37 chr13:49085000-49104800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
38 chr13:49085200-49096000 Strong transcription Primary monocytes fromperipheralblood blood
39 chr13:49085200-49100400 Weak transcription Primary T cells fromperipheralblood blood
40 chr13:49085200-49105600 Weak transcription Fetal Thymus thymus
41 chr13:49085600-49089600 Strong transcription Primary Natural Killer cells fromperipheralblood blood
42 chr13:49085800-49087400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
43 chr13:49086200-49088800 Weak transcription Liver Liver
44 chr13:49086200-49089200 Weak transcription Brain Cingulate Gyrus brain
45 chr13:49086200-49090000 Weak transcription Brain Hippocampus Middle brain
46 chr13:49086200-49090400 Weak transcription Fetal Stomach stomach
47 chr13:49086200-49090800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
48 chr13:49086200-49091200 Weak transcription Psoas Muscle Psoas
49 chr13:49086200-49091200 Weak transcription Stomach Smooth Muscle stomach
50 chr13:49086200-49094400 Weak transcription HUES64 Cell Line embryonic stem cell

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Last update: Aug 31, 2015