Variant report

Variant	rs191303462
Chromosome Location	chr6:147555630-147555631
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:147221766..147223377-chr6:147555409..147557127,2	K562	blood:
2	chr6:147555348..147557079-chr6:147583607..147585757,2	K562	blood:
3	chr6:147229321..147232231-chr6:147553682..147556359,2	K562	blood:
4	chr6:147523180..147526377-chr6:147555402..147557767,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164506	Chromatin interaction
ENSG00000233452	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019245	chr6:147350834-147609776	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538467	chr6:147350834-147609776	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886752	chr6:147443480-147729477	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv886753	chr6:147526508-147680291	Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv470864	chr6:147539165-147709179	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv886754	chr6:147539165-147729477	Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv604840	chr6:147539165-147730324	Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	esv1832155	chr6:147554900-147715464	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147526000-147572200	Weak transcription	Lung	lung
2	chr6:147527200-147557800	Weak transcription	Fetal Stomach	stomach
3	chr6:147527200-147570000	Weak transcription	Left Ventricle	heart
4	chr6:147527200-147572000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:147527200-147572200	Weak transcription	Esophagus	oesophagus
6	chr6:147527400-147558800	Weak transcription	Primary B cells from cord blood	blood
7	chr6:147527400-147563800	Weak transcription	NH-A	brain
8	chr6:147527400-147566800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr6:147527400-147576400	Weak transcription	HSMMtube	muscle
10	chr6:147527600-147559600	Weak transcription	Colon Smooth Muscle	Colon
11	chr6:147527800-147586800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr6:147528800-147565800	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr6:147528800-147572000	Weak transcription	A549	lung
14	chr6:147529000-147572200	Weak transcription	Aorta	Aorta
15	chr6:147529400-147571800	Weak transcription	Fetal Brain Male	brain
16	chr6:147530000-147572000	Weak transcription	NHEK	skin
17	chr6:147533200-147572200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr6:147534000-147572200	Weak transcription	Brain Cingulate Gyrus	brain
19	chr6:147535800-147557600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:147537600-147572200	Weak transcription	Ovary	ovary
21	chr6:147537800-147571600	Weak transcription	Fetal Muscle Trunk	muscle
22	chr6:147538200-147572200	Weak transcription	Spleen	Spleen
23	chr6:147538400-147572200	Weak transcription	Fetal Lung	lung
24	chr6:147538800-147572200	Weak transcription	Placenta	Placenta
25	chr6:147540200-147559200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr6:147540200-147569600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr6:147540200-147572000	Weak transcription	Thymus	Thymus
28	chr6:147540800-147561800	Weak transcription	Fetal Kidney	kidney
29	chr6:147542400-147590800	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr6:147543800-147556400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:147543800-147556800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr6:147543800-147556800	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr6:147543800-147557600	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr6:147543800-147557800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr6:147543800-147557800	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr6:147543800-147559000	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr6:147543800-147560600	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr6:147543800-147561800	Weak transcription	Adipose Nuclei	Adipose
39	chr6:147543800-147562000	Weak transcription	NHLF	lung
40	chr6:147543800-147562600	Weak transcription	Brain Hippocampus Middle	brain
41	chr6:147543800-147563600	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr6:147543800-147566200	Weak transcription	Stomach Mucosa	stomach
43	chr6:147543800-147572200	Weak transcription	Rectal Smooth Muscle	rectum
44	chr6:147543800-147588800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr6:147544000-147559200	Weak transcription	Fetal Intestine Small	intestine
46	chr6:147544000-147561800	Weak transcription	Duodenum Mucosa	Duodenum
47	chr6:147544000-147572200	Weak transcription	GM12878-XiMat	blood
48	chr6:147544200-147559400	Weak transcription	Fetal Thymus	thymus
49	chr6:147544200-147566800	Weak transcription	Pancreas	Pancrea
50	chr6:147544200-147574200	Weak transcription	H9 Cell Line	embryonic stem cell

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