Variant report

Variant	rs191475754
Chromosome Location	chr6:56734546-56734547
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RUNX3	chr6:56734127-56734610	GM12878	blood:	n/a	n/a
2	MYC	chr6:56734539-56734613	MCF-7	breast:	n/a	n/a
3	RUNX3	chr6:56734161-56734552	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:56722965..56725223-chr6:56732847..56735248,2	K562	blood:

Variant related genes	Relation type
RPL17P26	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv934026	chr6:56382056-57184218	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv533050	chr6:56504480-57297586	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1021651	chr6:56569444-56966319	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv538228	chr6:56569444-56966319	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv1022714	chr6:56729767-56826642	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv538229	chr6:56729767-56826642	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv965728	chr6:56733888-56740633	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56725600-56734800	Enhancers	Hela-S3	cervix
2	chr6:56727200-56734600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:56727800-56734800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:56728000-56734800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:56728000-56735000	Enhancers	HSMM	muscle
6	chr6:56728000-56735000	Enhancers	NHDF-Ad	bronchial
7	chr6:56728800-56734800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:56730400-56740400	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr6:56731600-56734600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:56731800-56734600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:56731800-56734800	Enhancers	NH-A	brain
12	chr6:56732000-56734800	Enhancers	NHLF	lung
13	chr6:56732400-56734800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:56732600-56736000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:56733000-56734600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:56733000-56734800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr6:56733800-56735200	Enhancers	H1 Cell Line	embryonic stem cell
18	chr6:56734000-56734800	Enhancers	A549	lung
19	chr6:56734200-56734800	Enhancers	HUVEC	blood vessel
20	chr6:56734200-56755400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:56734400-56734600	Enhancers	HSMMtube	muscle
22	chr6:56734400-56735000	Enhancers	GM12878-XiMat	blood
23	chr6:56734400-56735000	Enhancers	Osteobl	bone
24	chr6:56734400-56735200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr6:56734400-56735200	Enhancers	Muscle Satellite Cultured Cells	--
26	chr6:56734400-56735600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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