Variant report

Variant	rs191562279
Chromosome Location	chr3:112239599-112239600
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003936	chr3:112125931-112274613	Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv998309	chr3:112130290-112278804	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv591300	chr3:112144026-112270857	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv1006065	chr3:112147080-112276983	Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv1005323	chr3:112171990-112274613	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv877342	chr3:112185025-112332629	Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
7	esv3329419	chr3:112236688-112620544	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
8	nsv965197	chr3:112238965-112250194	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112218800-112241600	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr3:112227400-112269800	Weak transcription	Small Intestine	intestine
3	chr3:112231600-112246800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:112234000-112247600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr3:112234200-112272000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr3:112235600-112239800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr3:112235600-112243000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr3:112237000-112245400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr3:112237000-112247000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr3:112237200-112245600	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr3:112237200-112247400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr3:112237200-112254200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr3:112237400-112245400	Weak transcription	Primary B cells from cord blood	blood
14	chr3:112237600-112242600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr3:112237800-112245200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr3:112238000-112245800	Weak transcription	Primary T cells from cord blood	blood
17	chr3:112238200-112245600	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr3:112238200-112245800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr3:112238200-112247000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr3:112238200-112247400	Weak transcription	GM12878-XiMat	blood
21	chr3:112238600-112245800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr3:112238600-112249200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr3:112238800-112240600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr3:112238800-112242400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr3:112238800-112245600	Weak transcription	Primary B cells from peripheral blood	blood
26	chr3:112238800-112246000	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr3:112239000-112243200	Weak transcription	Fetal Stomach	stomach
28	chr3:112239200-112239800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr3:112239400-112239600	Enhancers	H9 Cell Line	embryonic stem cell
30	chr3:112239400-112240600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr3:112239400-112242400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links