Variant report

Variant	rs1915703
Chromosome Location	chr2:78832777-78832778
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10165699	0.94[CHB][hapmap];0.82[JPT][hapmap]
rs10168482	0.88[CHB][hapmap];0.84[CHD][hapmap];0.82[JPT][hapmap];0.88[MEX][hapmap]
rs10172554	0.88[CHB][hapmap];0.81[JPT][hapmap]
rs10172579	0.94[CHB][hapmap];0.84[CHD][hapmap];0.82[JPT][hapmap];0.87[MEX][hapmap]
rs10182282	0.88[CHB][hapmap]
rs10185733	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs10197523	0.94[CHB][hapmap];0.82[JPT][hapmap]
rs10204484	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs10205850	0.92[CHB][hapmap]
rs10210902	0.94[CHB][hapmap];0.82[JPT][hapmap]
rs1040179	0.94[CHB][hapmap]
rs10865434	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs11126672	0.94[CHB][hapmap];0.82[JPT][hapmap]
rs1113580	0.82[ASN][1000 genomes]
rs1158017	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs12613066	0.94[CHB][hapmap];0.82[JPT][hapmap]
rs12713965	0.94[CHB][hapmap];0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs13014178	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs13385712	0.94[CHB][hapmap];0.82[JPT][hapmap]
rs13429424	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs1378427	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs1378428	0.82[CHB][hapmap];0.82[JPT][hapmap];0.88[MEX][hapmap]
rs1400133	0.94[CHB][hapmap];0.82[JPT][hapmap]
rs1400134	0.94[CHB][hapmap]
rs1455384	0.94[CHB][hapmap]
rs1455385	0.94[CHB][hapmap];0.82[JPT][hapmap];0.87[MEX][hapmap]
rs1516250	0.88[CHB][hapmap];0.84[CHD][hapmap];0.87[JPT][hapmap]
rs1516251	0.94[CHB][hapmap];0.82[JPT][hapmap];0.87[MEX][hapmap]
rs1516253	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs1521499	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1521501	0.88[CHB][hapmap];0.84[CHD][hapmap];0.82[JPT][hapmap];0.88[MEX][hapmap]
rs1521502	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs1521503	0.88[CHB][hapmap];0.84[CHD][hapmap];0.82[JPT][hapmap];0.88[MEX][hapmap]
rs1543141	1.00[CHB][hapmap]
rs1563313	0.88[MEX][hapmap]
rs1563314	0.94[CHB][hapmap];0.82[JPT][hapmap]
rs1568062	0.94[CHB][hapmap];0.82[JPT][hapmap]
rs1717554	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2009237	0.82[JPT][hapmap];0.88[MEX][hapmap]
rs2018108	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs2138488	0.94[CHB][hapmap];0.81[JPT][hapmap]
rs2203582	0.94[CHB][hapmap];0.82[JPT][hapmap]
rs2219183	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs2861610	0.81[MEX][hapmap]
rs2861611	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs2861613	0.94[CHB][hapmap];0.82[JPT][hapmap]
rs4303736	0.88[CHB][hapmap];0.82[CHD][hapmap];0.82[JPT][hapmap];0.88[MEX][hapmap]
rs4488689	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs4853388	0.81[CHB][hapmap]
rs4853394	0.94[CHB][hapmap];0.82[JPT][hapmap]
rs4853400	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs6717285	0.94[CHB][hapmap];0.82[JPT][hapmap]
rs6725891	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs6740971	0.85[CHB][hapmap]
rs7580922	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs7598502	0.88[CHB][hapmap];0.84[CHD][hapmap];0.82[JPT][hapmap];0.88[MEX][hapmap]
rs768071	0.88[CHB][hapmap];0.82[JPT][hapmap];0.94[MEX][hapmap]
rs908439	0.94[CHB][hapmap];0.82[JPT][hapmap];0.94[MEX][hapmap]
rs932141	0.88[CHB][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014232	chr2:78413760-79034119	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv535788	chr2:78413760-79034119	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv916498	chr2:78429997-79340383	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv582273	chr2:78432494-78978011	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1014484	chr2:78504497-78972453	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv3584761	chr2:78545020-79430628	Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv998961	chr2:78574081-79150087	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1002687	chr2:78575186-78943679	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv535790	chr2:78575186-78943679	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv428052	chr2:78615333-79075603	Enhancers ZNF genes & repeats Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv874364	chr2:78640246-78857870	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv874366	chr2:78658280-78857870	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv874367	chr2:78658280-78945755	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv874370	chr2:78668935-79013457	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv874372	chr2:78756804-78857870	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv582292	chr2:78824001-78857870	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	esv3392450	chr2:78830144-78834842	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:78832400-78833200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:78832400-78834600	Enhancers	HUES48 Cell Line	embryonic stem cell

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