Variant report

Variant	rs1915746
Chromosome Location	chr2:213025556-213025557
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12104833	1.00[CHB][hapmap]
rs1402767	0.94[EUR][1000 genomes]
rs1568519	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs16847780	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes]
rs17344454	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2090865	0.94[EUR][1000 genomes]
rs4528708	1.00[CHB][hapmap]
rs4673643	1.00[CHB][hapmap]
rs57367348	0.98[EUR][1000 genomes]
rs6749273	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs6755132	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs72939812	0.94[EUR][1000 genomes]
rs72939823	0.94[EUR][1000 genomes]
rs72939829	0.94[EUR][1000 genomes]
rs72945643	1.00[AFR][1000 genomes]
rs7558179	0.84[EUR][1000 genomes]
rs7564926	1.00[CHB][hapmap]
rs7600270	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011572	chr2:212840066-213152279	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv875805	chr2:212891401-213164837	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv875806	chr2:212997024-213211067	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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