Variant report

Variant	rs191618048
Chromosome Location	chr5:112881305-112881306
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:112881042..112882693-chr5:112886312..112889101,2	MCF-7	breast:
2	chr5:112879476..112882434-chr5:112884296..112887058,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882720	chr5:112859994-112911165	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv882721	chr5:112859994-112963488	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv882722	chr5:112868878-112899573	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv882723	chr5:112868878-112911165	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv882724	chr5:112868878-112933202	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
6	esv2540445	chr5:112880688-112882145	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3448463	chr5:112880753-112882751	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2162364	chr5:112881233-112881948	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3322239	chr5:112881253-112882251	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3469726	chr5:112881296-112881841	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112850400-112904000	Weak transcription	Psoas Muscle	Psoas
2	chr5:112850600-112908400	Weak transcription	Colonic Mucosa	Colon
3	chr5:112851600-112893200	Weak transcription	Fetal Brain Male	brain
4	chr5:112851600-112902800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr5:112852400-112882200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr5:112852400-112882200	Weak transcription	Fetal Heart	heart
7	chr5:112853200-112882400	Weak transcription	Brain Angular Gyrus	brain
8	chr5:112858800-112882000	Weak transcription	Brain Substantia Nigra	brain
9	chr5:112858800-112882200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr5:112860400-112882200	Weak transcription	Colon Smooth Muscle	Colon
11	chr5:112862800-112891200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr5:112864200-112882200	Weak transcription	Stomach Mucosa	stomach
13	chr5:112867000-112882000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr5:112867000-112888200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr5:112867000-112910000	Weak transcription	Right Ventricle	heart
16	chr5:112867200-112882400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr5:112867200-112903400	Weak transcription	Pancreas	Pancrea
18	chr5:112867200-112904000	Weak transcription	Lung	lung
19	chr5:112867200-112904200	Weak transcription	Aorta	Aorta
20	chr5:112867200-112909800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr5:112867200-112909800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr5:112867200-112910000	Weak transcription	Esophagus	oesophagus
23	chr5:112867400-112882200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr5:112867400-112888000	Weak transcription	HSMMtube	muscle
25	chr5:112867400-112888800	Weak transcription	Ovary	ovary
26	chr5:112867400-112926000	Weak transcription	Small Intestine	intestine
27	chr5:112867400-112933000	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr5:112867600-112882600	Weak transcription	Fetal Brain Female	brain
29	chr5:112867600-112891200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr5:112868000-112893400	Strong transcription	Dnd41	blood
31	chr5:112868400-112893600	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr5:112868600-112886400	Strong transcription	Liver	Liver
33	chr5:112868600-112911400	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr5:112869200-112910000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr5:112869800-112884200	Weak transcription	Fetal Kidney	kidney
36	chr5:112870200-112930800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr5:112871200-112882200	Weak transcription	NH-A	brain
38	chr5:112871600-112881400	Strong transcription	Fetal Muscle Leg	muscle
39	chr5:112872000-112904000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr5:112872000-112915000	Weak transcription	Hela-S3	cervix
41	chr5:112872200-112882000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr5:112873000-112883200	Strong transcription	Fetal Thymus	thymus
43	chr5:112873000-112894000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr5:112873000-112900600	Strong transcription	Primary T cells fromperipheralblood	blood
45	chr5:112873400-112908800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr5:112873800-112883000	Strong transcription	Adipose Nuclei	Adipose
47	chr5:112873800-112888400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr5:112874000-112909600	Weak transcription	Spleen	Spleen
49	chr5:112874400-112902600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr5:112876000-112882600	Weak transcription	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links