Variant report

Variant	rs191661216
Chromosome Location	chr11:67140586-67140587
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:40)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:40 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:67140365..67142235-chr11:67187974..67189991,2	K562	blood:
2	chr11:67138591..67140616-chr11:67149692..67150721,9	MCF-7	breast:
3	chr11:67140165..67142541-chr11:67273740..67276217,2	MCF-7	breast:
4	chr11:66821897..66826528-chr11:67139094..67144065,11	MCF-7	breast:
5	chr11:67031846..67035344-chr11:67139453..67142374,3	K562	blood:
6	chr11:66622570..66624423-chr11:67139168..67140990,2	MCF-7	breast:
7	chr11:67006828..67010582-chr11:67138867..67142453,4	MCF-7	breast:
8	chr11:67053474..67057507-chr11:67138689..67143945,8	MCF-7	breast:
9	chr11:67138872..67142169-chr11:67249496..67254071,4	MCF-7	breast:
10	chr11:67033933..67038277-chr11:67140224..67143646,5	MCF-7	breast:
11	chr11:66788543..66790931-chr11:67139607..67141552,2	MCF-7	breast:
12	chr11:67069872..67072644-chr11:67140515..67142125,2	K562	blood:
13	chr11:66823034..66824892-chr11:67139520..67142366,3	MCF-7	breast:
14	chr11:66845534..66847277-chr11:67139384..67140950,2	MCF-7	breast:
15	chr11:67140268..67142517-chr20:55839534..55841832,2	MCF-7	breast:
16	chr11:67139765..67142051-chr17:57918264..57920706,2	MCF-7	breast:
17	chr11:67137032..67142528-chr11:67234580..67238729,6	MCF-7	breast:
18	chr11:67138903..67140672-chr11:67189332..67192243,2	K562	blood:
19	chr11:67140319..67142184-chr11:67395845..67397635,2	MCF-7	breast:
20	chr11:67006855..67009254-chr11:67139637..67141684,2	MCF-7	breast:
21	chr11:67138865..67141337-chr11:67205315..67206965,2	K562	blood:
22	chr11:67140186..67140958-chr19:50380426..50381114,2	Hela-S3	cervix:
23	chr11:67077940..67083214-chr11:67140082..67142904,6	MCF-7	breast:
24	chr11:67140485..67142430-chr11:67273527..67275502,2	K562	blood:
25	chr11:62608228..62609142-chr11:67139785..67140767,2	HCT-116	colon:
26	chr11:67138430..67143112-chr11:67157518..67161987,7	K562	blood:
27	chr11:67139501..67142119-chr16:3071898..3074181,2	MCF-7	breast:
28	chr11:67070466..67072644-chr11:67139702..67142015,2	K562	blood:
29	chr11:67139623..67143035-chr11:67167894..67169679,3	K562	blood:
30	chr11:67069839..67071996-chr11:67139740..67141397,2	MCF-7	breast:
31	chr11:67055136..67057390-chr11:67140087..67141656,2	MCF-7	breast:
32	chr11:67069246..67073295-chr11:67139634..67145393,8	MCF-7	breast:
33	chr11:67044106..67046398-chr11:67138784..67140765,2	K562	blood:
34	chr11:67140134..67141664-chr11:67209999..67212449,2	K562	blood:
35	chr11:67140249..67142626-chr11:67380875..67383552,2	MCF-7	breast:
36	chr11:67078342..67081725-chr11:67139517..67143464,5	MCF-7	breast:
37	chr11:66886882..66888512-chr11:67137835..67140678,2	MCF-7	breast:
38	chr11:67030856..67037366-chr11:67138319..67144892,13	MCF-7	breast:
39	chr11:67116951..67127260-chr11:67135118..67146037,42	K562	blood:
40	chr11:67139414..67143301-chr11:67273275..67276817,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000101144	Chromatin interaction
ENSG00000131652	Chromatin interaction
ENSG00000213402	Chromatin interaction
ENSG00000231793	Chromatin interaction
ENSG00000172725	Chromatin interaction
ENSG00000167799	Chromatin interaction
ENSG00000172663	Chromatin interaction
ENSG00000199004	Chromatin interaction
ENSG00000104946	Chromatin interaction
ENSG00000173621	Chromatin interaction
ENSG00000172932	Chromatin interaction
ENSG00000172830	Chromatin interaction
ENSG00000110711	Chromatin interaction
ENSG00000172508	Chromatin interaction
ENSG00000103145	Chromatin interaction
ENSG00000172531	Chromatin interaction
ENSG00000175482	Chromatin interaction
ENSG00000173020	Chromatin interaction
ENSG00000173156	Chromatin interaction
ENSG00000173120	Chromatin interaction
ENSG00000167797	Chromatin interaction
ENSG00000172613	Chromatin interaction
ENSG00000173227	Chromatin interaction
ENSG00000204673	Chromatin interaction
ENSG00000110697	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv933183	chr11:67008447-67160993	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	nsv897796	chr11:67021518-67186000	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
4	nsv897797	chr11:67023040-67293234	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	206 gene(s)	inside rSNPs	diseases
5	nsv1043037	chr11:67027193-67357425	Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
6	nsv468603	chr11:67033076-67164495	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
7	nsv555253	chr11:67033076-67164495	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
8	nsv897801	chr11:67033076-67432479	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	236 gene(s)	inside rSNPs	diseases
9	nsv1047890	chr11:67058231-67184436	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
10	nsv1048230	chr11:67058231-67252397	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	146 gene(s)	inside rSNPs	diseases
11	nsv897804	chr11:67090571-67224278	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
12	nsv1039205	chr11:67135246-67252397	Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
13	esv1818769	chr11:67138811-67300457	Flanking Active TSS Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	167 gene(s)	inside rSNPs	diseases
14	esv3404685	chr11:67139076-67142024	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	38 gene(s)	inside rSNPs	diseases
15	esv3326147	chr11:67139201-67141749	Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	38 gene(s)	inside rSNPs	diseases
16	esv3323213	chr11:67139601-67142149	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region	38 gene(s)	inside rSNPs	diseases
17	esv1798859	chr11:67139954-67272983	Active TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:67136800-67143600	Bivalent Enhancer	Fetal Thymus	thymus
2	chr11:67139000-67141600	Active TSS	HSMMtube	muscle
3	chr11:67139200-67141600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
4	chr11:67139400-67141000	Transcr. at gene 5' and 3'	Right Atrium	heart
5	chr11:67139400-67141600	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr11:67139400-67141800	Active TSS	Fetal Kidney	kidney
7	chr11:67139400-67142000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:67139400-67142000	Active TSS	Muscle Satellite Cultured Cells	--
9	chr11:67139600-67140600	Bivalent/Poised TSS	Thymus	Thymus
10	chr11:67139600-67141400	Active TSS	Primary T helper naive cells from peripheral blood	blood
11	chr11:67139600-67141400	Active TSS	Small Intestine	intestine
12	chr11:67139600-67141600	Active TSS	H9 Cell Line	embryonic stem cell
13	chr11:67139600-67141600	Active TSS	Sigmoid Colon	Sigmoid Colon
14	chr11:67139600-67141600	Active TSS	HSMM	muscle
15	chr11:67139600-67141600	Active TSS	Osteobl	bone
16	chr11:67139600-67141800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr11:67139600-67141800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:67139600-67142000	Active TSS	ES-I3 Cell Line	embryonic stem cell
19	chr11:67139600-67142000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr11:67139600-67142000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr11:67139600-67142000	Active TSS	Breast Myoepithelial Primary Cells	Breast
22	chr11:67139600-67142000	Active TSS	NHDF-Ad	bronchial
23	chr11:67139600-67142400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
24	chr11:67139800-67140600	Weak transcription	Stomach Mucosa	stomach
25	chr11:67139800-67140800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr11:67139800-67140800	Active TSS	Brain Hippocampus Middle	brain
27	chr11:67139800-67141000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr11:67139800-67141000	Weak transcription	Fetal Heart	heart
29	chr11:67139800-67141200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr11:67139800-67141400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr11:67139800-67141400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr11:67139800-67141400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
33	chr11:67139800-67141400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
34	chr11:67139800-67141400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
35	chr11:67139800-67141400	Active TSS	Colon Smooth Muscle	Colon
36	chr11:67139800-67141400	Active TSS	Esophagus	oesophagus
37	chr11:67139800-67141400	Active TSS	Fetal Intestine Small	intestine
38	chr11:67139800-67141400	Active TSS	Ovary	ovary
39	chr11:67139800-67141400	Active TSS	Placenta Amnion	Placenta Amnion
40	chr11:67139800-67141400	Active TSS	HUVEC	blood vessel
41	chr11:67139800-67141400	Active TSS	NHEK	skin
42	chr11:67139800-67141600	Active TSS	HUES6 Cell Line	embryonic stem cell
43	chr11:67139800-67141600	Active TSS	Brain Substantia Nigra	brain
44	chr11:67139800-67141600	Active TSS	Fetal Lung	lung
45	chr11:67139800-67141600	Active TSS	Gastric	stomach
46	chr11:67139800-67141600	Active TSS	Left Ventricle	heart
47	chr11:67139800-67141600	Active TSS	HMEC	breast
48	chr11:67139800-67141600	Active TSS	NHLF	lung
49	chr11:67139800-67141800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
50	chr11:67139800-67141800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links