Variant report

Variant	rs1917740
Chromosome Location	chr7:71085200-71085201
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11975246	1.00[AMR][1000 genomes]
rs1464901	1.00[AMR][1000 genomes]
rs1464902	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1525719	0.83[AMR][1000 genomes]
rs16869514	1.00[AMR][1000 genomes]
rs17143664	1.00[AMR][1000 genomes]
rs17143672	1.00[AMR][1000 genomes]
rs4145368	1.00[AMR][1000 genomes]
rs4717607	0.83[AMR][1000 genomes]
rs4719154	1.00[AMR][1000 genomes]
rs56006064	1.00[AMR][1000 genomes]
rs59375930	1.00[AMR][1000 genomes]
rs59873623	0.83[AMR][1000 genomes]
rs60625937	1.00[AMR][1000 genomes]
rs6959598	0.83[AMR][1000 genomes]
rs6971016	1.00[AMR][1000 genomes]
rs73702212	0.83[AMR][1000 genomes]
rs73702218	0.83[AMR][1000 genomes]
rs73702222	1.00[AMR][1000 genomes]
rs73702224	1.00[AMR][1000 genomes]
rs73702229	1.00[AMR][1000 genomes]
rs7780705	0.83[AMR][1000 genomes]
rs7781829	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7790588	1.00[AMR][1000 genomes]
rs7801821	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1026896	chr7:71003462-71721516	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv516049	chr7:71026463-71280299	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1019799	chr7:71027947-71274161	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv538938	chr7:71027947-71274161	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1016182	chr7:71033825-71285800	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1034811	chr7:71033825-71288961	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1024288	chr7:71039619-71285800	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1027835	chr7:71055226-71281334	Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv538939	chr7:71055226-71281334	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1026364	chr7:71055226-71287960	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv538940	chr7:71055226-71287960	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv948337	chr7:71057204-71277518	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:71078400-71085200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr7:71080200-71086200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:71080200-71090200	Weak transcription	Fetal Brain Female	brain
4	chr7:71080200-71092200	Weak transcription	Ovary	ovary
5	chr7:71080400-71090600	Weak transcription	NH-A	brain
6	chr7:71080800-71091800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr7:71081000-71088600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr7:71081400-71097200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr7:71083400-71089200	Weak transcription	Fetal Brain Male	brain
10	chr7:71084200-71086200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr7:71084600-71086400	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr7:71084800-71086400	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr7:71084800-71086400	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr7:71084800-71086400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr7:71085000-71085200	Enhancers	HSMM	muscle
16	chr7:71085000-71085400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr7:71085000-71085400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr7:71085000-71085600	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr7:71085000-71086400	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr7:71085200-71086200	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr7:71085200-71086400	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr7:71085200-71091200	Weak transcription	HSMM	muscle

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