Variant report

Variant	rs191782612
Chromosome Location	chr10:50324109-50324110
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr10:50322989-50324184	K562	blood:	n/a	n/a
2	RCOR1	chr10:50323458-50324528	IMR90	lung:	n/a	n/a
3	RCOR1	chr10:50323399-50324329	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50322533..50324257-chr10:50507150..50509486,2	K562	blood:
2	chr10:50322283..50325786-chr10:50341748..50344745,3	K562	blood:

Variant related genes	Relation type
VSTM4	TF binding region
ENSG00000172538	Chromatin interaction
ENSG00000177354	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
2	esv2761593	chr10:50276812-50336129	Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	esv1824894	chr10:50309905-50340304	Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
6	nsv550817	chr10:50319387-50328494	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	esv3497465	chr10:50322646-50324644	Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	esv3497466	chr10:50322646-50324644	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	esv1796109	chr10:50323229-50326725	Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
10	esv1802290	chr10:50323229-50326725	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
11	esv1818143	chr10:50323229-50332930	Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50322200-50324600	Active TSS	Brain Cingulate Gyrus	brain
2	chr10:50322800-50324400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
3	chr10:50322800-50324600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
4	chr10:50323200-50324200	Active TSS	K562	blood
5	chr10:50323600-50324200	Flanking Active TSS	Fetal Muscle Trunk	muscle
6	chr10:50323800-50324200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
7	chr10:50323800-50324200	Bivalent Enhancer	Primary T cells from cord blood	blood
8	chr10:50323800-50324200	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
9	chr10:50323800-50324200	Flanking Active TSS	Stomach Smooth Muscle	stomach
10	chr10:50323800-50326200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:50323800-50327800	Weak transcription	NH-A	brain
12	chr10:50324000-50324200	Active TSS	iPS-18 Cell Line	embryonic stem cell
13	chr10:50324000-50324200	Enhancers	Primary hematopoietic stem cells	blood
14	chr10:50324000-50324200	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr10:50324000-50324200	Enhancers	Brain Hippocampus Middle	brain
16	chr10:50324000-50324200	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr10:50324000-50324200	Enhancers	Fetal Stomach	stomach
18	chr10:50324000-50324200	Bivalent Enhancer	Rectal Mucosa Donor 29	rectum
19	chr10:50324000-50324200	Enhancers	Right Ventricle	heart
20	chr10:50324000-50324200	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr10:50324000-50324200	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr10:50324000-50324400	Bivalent Enhancer	Fetal Muscle Leg	muscle
23	chr10:50324000-50324800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr10:50324000-50325000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr10:50324000-50325000	Enhancers	Ovary	ovary
26	chr10:50324000-50325200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr10:50324000-50325200	Weak transcription	Adipose Nuclei	Adipose
28	chr10:50324000-50325400	Enhancers	Liver	Liver
29	chr10:50324000-50325600	Weak transcription	Brain Angular Gyrus	brain
30	chr10:50324000-50325800	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr10:50324000-50327200	Enhancers	Fetal Thymus	thymus
32	chr10:50324000-50328200	Weak transcription	HSMMtube	muscle
33	chr10:50324000-50343600	Weak transcription	Right Atrium	heart

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