Variant report

Variant	rs191814605
Chromosome Location	chr4:77033942-77033943
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:77031133..77035310-chr4:77057270..77059295,3	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529613	chr4:76654941-77081576	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1009047	chr4:76989180-77077885	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv470047	chr4:77033590-77096777	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv594693	chr4:77033590-77101068	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv461558	chr4:77033725-77115553	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
6	nsv594694	chr4:77033725-77115553	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77017000-77034400	Weak transcription	Right Ventricle	heart
2	chr4:77027200-77034000	Weak transcription	Brain Anterior Caudate	brain
3	chr4:77027200-77034400	Weak transcription	Fetal Muscle Leg	muscle
4	chr4:77027200-77035400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr4:77027600-77034200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr4:77027600-77034400	Weak transcription	Brain Hippocampus Middle	brain
7	chr4:77027600-77037400	Weak transcription	Brain Substantia Nigra	brain
8	chr4:77027800-77034200	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr4:77027800-77034200	Weak transcription	Fetal Brain Female	brain
10	chr4:77027800-77036400	Weak transcription	Brain Angular Gyrus	brain
11	chr4:77027800-77038400	Weak transcription	Fetal Brain Male	brain
12	chr4:77028000-77034000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr4:77028000-77037600	Weak transcription	Brain Cingulate Gyrus	brain
14	chr4:77028000-77068600	Weak transcription	Gastric	stomach
15	chr4:77028400-77034400	Weak transcription	K562	blood
16	chr4:77030000-77034400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr4:77030000-77037400	Weak transcription	NHDF-Ad	bronchial
18	chr4:77030600-77034000	Weak transcription	GM12878-XiMat	blood
19	chr4:77030600-77036400	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr4:77030600-77038400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr4:77030800-77034200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr4:77030800-77034400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr4:77031000-77034200	Weak transcription	HUVEC	blood vessel
24	chr4:77031200-77034000	Weak transcription	NH-A	brain
25	chr4:77031200-77034200	Weak transcription	Osteobl	bone
26	chr4:77031200-77037800	Weak transcription	NHLF	lung
27	chr4:77031400-77034000	Weak transcription	Pancreas	Pancrea
28	chr4:77031400-77034000	Weak transcription	Dnd41	blood
29	chr4:77031600-77034400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr4:77031600-77034800	Weak transcription	HMEC	breast
31	chr4:77031600-77039200	Weak transcription	Fetal Intestine Small	intestine
32	chr4:77031800-77034200	Weak transcription	Hela-S3	cervix
33	chr4:77031800-77036200	Weak transcription	Primary B cells from cord blood	blood
34	chr4:77031800-77036200	Weak transcription	Colon Smooth Muscle	Colon
35	chr4:77032000-77034200	Weak transcription	Fetal Kidney	kidney
36	chr4:77032000-77034400	Weak transcription	A549	lung
37	chr4:77032000-77036200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr4:77032000-77036400	Weak transcription	Aorta	Aorta
39	chr4:77032000-77037600	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr4:77032200-77034000	Weak transcription	Fetal Muscle Trunk	muscle
41	chr4:77032200-77034400	Weak transcription	Psoas Muscle	Psoas
42	chr4:77032200-77035200	Strong transcription	Left Ventricle	heart
43	chr4:77032200-77049200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr4:77032400-77034000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr4:77032400-77034000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr4:77032400-77034000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr4:77032400-77034000	Weak transcription	Fetal Heart	heart
48	chr4:77032400-77034000	Weak transcription	Fetal Intestine Large	intestine
49	chr4:77032400-77034200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr4:77032400-77034200	Weak transcription	Esophagus	oesophagus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links