Variant report

Variant	rs1918933
Chromosome Location	chr7:78915217-78915218
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10244816	0.85[EUR][1000 genomes]
rs10264341	0.85[EUR][1000 genomes]
rs10274797	0.85[EUR][1000 genomes]
rs11977156	0.85[EUR][1000 genomes]
rs11980152	0.85[EUR][1000 genomes]
rs12666680	0.85[EUR][1000 genomes]
rs12670442	0.85[EUR][1000 genomes]
rs12670971	0.81[EUR][1000 genomes]
rs12670981	0.85[EUR][1000 genomes]
rs12706106	0.85[EUR][1000 genomes]
rs12706107	0.85[EUR][1000 genomes]
rs1358471	0.85[EUR][1000 genomes]
rs1406153	0.85[EUR][1000 genomes]
rs1406154	0.85[EUR][1000 genomes]
rs1406155	0.85[EUR][1000 genomes]
rs1406156	0.85[EUR][1000 genomes]
rs1534492	0.85[EUR][1000 genomes]
rs1534493	0.85[EUR][1000 genomes]
rs1609273	0.85[EUR][1000 genomes]
rs1609274	0.85[EUR][1000 genomes]
rs1609275	0.85[EUR][1000 genomes]
rs1609276	0.85[EUR][1000 genomes]
rs17152224	0.85[EUR][1000 genomes]
rs17152238	0.85[EUR][1000 genomes]
rs17152245	0.85[EUR][1000 genomes]
rs1918932	0.85[EUR][1000 genomes]
rs2178169	0.85[EUR][1000 genomes]
rs28401690	0.85[EUR][1000 genomes]
rs4727839	0.85[EUR][1000 genomes]
rs4727840	0.85[EUR][1000 genomes]
rs4727842	0.85[EUR][1000 genomes]
rs4730757	0.85[EUR][1000 genomes]
rs4730758	0.85[EUR][1000 genomes]
rs59620956	0.85[EUR][1000 genomes]
rs6963053	0.85[EUR][1000 genomes]
rs6963068	0.85[EUR][1000 genomes]
rs6975958	0.85[EUR][1000 genomes]
rs73375128	0.85[EUR][1000 genomes]
rs73375139	0.85[EUR][1000 genomes]
rs73375150	0.85[EUR][1000 genomes]
rs73375151	0.85[EUR][1000 genomes]
rs73375156	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1029799	chr7:78608097-79061737	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv831041	chr7:78819499-78973222	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2764028	chr7:78874740-79112630	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78910600-78915800	Enhancers	NHEK	skin
2	chr7:78911400-78915600	Enhancers	HMEC	breast
3	chr7:78912000-78917400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr7:78912000-78922200	Weak transcription	Brain Angular Gyrus	brain
5	chr7:78912600-78915400	Enhancers	NHDF-Ad	bronchial
6	chr7:78912800-78915800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr7:78913000-78915400	Enhancers	Osteobl	bone
8	chr7:78913400-78920600	Weak transcription	HUVEC	blood vessel
9	chr7:78913600-78915400	Enhancers	Muscle Satellite Cultured Cells	--
10	chr7:78913800-78919800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr7:78913800-78920000	Weak transcription	NH-A	brain
12	chr7:78913800-78922400	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr7:78913800-78923000	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr7:78914200-78915400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr7:78914400-78915400	Enhancers	A549	lung
16	chr7:78914600-78915800	Enhancers	NHLF	lung
17	chr7:78914800-78915400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr7:78914800-78915400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr7:78914800-78915800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr7:78915200-78915400	Enhancers	HSMM	muscle

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