Variant report

Variant	rs191902
Chromosome Location	chr6:33489431-33489432
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:33479121..33484420-chr6:33487848..33490096,5	K562	blood:
2	chr6:33483395..33487072-chr6:33487166..33490449,4	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1794687	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs210177	0.84[EUR][1000 genomes]
rs210178	0.85[EUR][1000 genomes]
rs210180	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs210182	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs210183	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs210184	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs210185	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs210186	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs210187	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs210192	0.85[EUR][1000 genomes]
rs210196	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs210197	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs367408	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs367897	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs368429	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs368716	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs371155	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs372469	0.84[EUR][1000 genomes]
rs372846	0.84[EUR][1000 genomes]
rs380163	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs383936	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs386879	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3916269	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs396516	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs404778	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs405126	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs447418	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs449242	0.89[EUR][1000 genomes]
rs73404347	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9461874	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9469481	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9469483	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830637	chr6:33329365-33510704	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv602832	chr6:33382241-33520221	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv524010	chr6:33468151-33505981	Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33481400-33491200	Weak transcription	Right Atrium	heart
2	chr6:33489200-33490000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links