Variant report

Variant	rs191904984
Chromosome Location	chr13:52033514-52033515
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FAM48A	chr13:52033499-52033680	GM12878	blood:	n/a	n/a
2	POLR2A	chr13:52033240-52033582	MCF10A-Er-Src	breast:	n/a	n/a
3	POLR2A	chr13:52033505-52033718	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:52025794..52034237-chr13:52040132..52048046,20	K562	blood:

Variant related genes	Relation type
RPS4XP16	TF binding region
ENSG00000243900	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv977240	chr13:52033195-52035408	Weak transcription Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52028600-52034000	Weak transcription	Aorta	Aorta
2	chr13:52028600-52036000	Weak transcription	HSMMtube	muscle
3	chr13:52029000-52034000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr13:52030400-52035200	Weak transcription	HSMM	muscle
5	chr13:52030600-52035800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr13:52030600-52036000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr13:52030600-52038800	Weak transcription	HepG2	liver
8	chr13:52030800-52033800	Weak transcription	Placenta	Placenta
9	chr13:52030800-52034400	Weak transcription	Adipose Nuclei	Adipose
10	chr13:52030800-52035400	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr13:52030800-52035400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr13:52030800-52036000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr13:52030800-52036000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr13:52030800-52036200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr13:52030800-52036200	Weak transcription	Duodenum Mucosa	Duodenum
16	chr13:52031000-52034000	Weak transcription	Left Ventricle	heart
17	chr13:52031000-52036000	Weak transcription	Esophagus	oesophagus
18	chr13:52031000-52039800	Weak transcription	A549	lung
19	chr13:52031000-52044800	Weak transcription	Liver	Liver
20	chr13:52031200-52035800	Weak transcription	Primary T cells from cord blood	blood
21	chr13:52031200-52036200	Weak transcription	Gastric	stomach
22	chr13:52031200-52041400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr13:52031400-52034800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr13:52031400-52035800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr13:52031400-52036200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr13:52031400-52036200	Weak transcription	Stomach Smooth Muscle	stomach
27	chr13:52031400-52036600	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr13:52031400-52036800	Weak transcription	Fetal Stomach	stomach
29	chr13:52031400-52037000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr13:52031600-52034400	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr13:52031600-52035800	Weak transcription	Fetal Muscle Trunk	muscle
32	chr13:52031600-52036400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr13:52031600-52041600	Weak transcription	Pancreas	Pancrea
34	chr13:52031800-52035800	Weak transcription	Fetal Muscle Leg	muscle
35	chr13:52031800-52045400	Weak transcription	Primary B cells from cord blood	blood
36	chr13:52032000-52035400	Weak transcription	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links