Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10762675	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10824291	0.84[EUR][1000 genomes]
rs10824295	0.85[EUR][1000 genomes]
rs10824300	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10824303	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10824336	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11001339	0.84[EUR][1000 genomes]
rs11001343	0.89[EUR][1000 genomes]
rs11001447	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11001456	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11001472	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12218397	0.84[EUR][1000 genomes]
rs12768182	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1875792	0.84[EUR][1000 genomes]
rs1875794	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1919461	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2339954	0.80[EUR][1000 genomes]
rs4041235	0.87[EUR][1000 genomes]
rs7074246	0.89[EUR][1000 genomes]
rs7083967	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7907681	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7916242	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045692	chr10:53301450-54086823	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv532194	chr10:53746620-54735550	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv895399	chr10:53900872-54219820	Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv550889	chr10:54016062-54044615	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:54002000-54042000	Weak transcription	Aorta	Aorta
2	chr10:54017400-54042600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr10:54017400-54049600	Weak transcription	Left Ventricle	heart
4	chr10:54019600-54038800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr10:54023600-54042000	Weak transcription	Psoas Muscle	Psoas
6	chr10:54028000-54045600	Weak transcription	NHDF-Ad	bronchial
7	chr10:54028400-54039000	Weak transcription	HSMMtube	muscle
8	chr10:54029600-54040600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr10:54029800-54055400	Weak transcription	Fetal Lung	lung
10	chr10:54031400-54042200	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr10:54032200-54037200	Weak transcription	Fetal Muscle Leg	muscle
12	chr10:54032200-54044200	Weak transcription	Fetal Muscle Trunk	muscle
13	chr10:54032600-54039800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr10:54036000-54050400	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr10:54036400-54037600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr10:54036800-54047400	Weak transcription	Fetal Intestine Large	intestine
17	chr10:54037000-54037200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
18	chr10:54037000-54037400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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