Variant report

Variant	rs1919543
Chromosome Location	chr7:52866542-52866543
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1528990	0.80[ASN][1000 genomes]
rs2913043	0.80[ASN][1000 genomes]
rs2913044	0.80[ASN][1000 genomes]
rs2913045	0.80[ASN][1000 genomes]
rs2913046	0.80[ASN][1000 genomes]
rs2913048	0.80[ASN][1000 genomes]
rs2913050	0.80[ASN][1000 genomes]
rs2965516	0.80[ASN][1000 genomes]
rs2965517	0.80[ASN][1000 genomes]
rs2965518	0.80[ASN][1000 genomes]
rs2965519	0.80[ASN][1000 genomes]
rs2965520	0.80[ASN][1000 genomes]
rs2965521	0.80[ASN][1000 genomes]
rs2965527	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2965528	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888026	chr7:52588348-53013671	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv888027	chr7:52588348-53190508	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv888029	chr7:52797324-52881559	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv888030	chr7:52797324-52894247	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv888031	chr7:52797324-52944424	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv888032	chr7:52826003-52905932	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1919543	DDC	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:52866000-52866800	Enhancers	Fetal Brain Female	brain
2	chr7:52866200-52866600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:52866200-52867000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr7:52866200-52867400	Enhancers	Fetal Brain Male	brain
5	chr7:52866400-52867400	Enhancers	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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