Variant report

Variant	rs1919936
Chromosome Location	chr7:26460041-26460042
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:26436548..26440946-chr7:26456240..26460952,5	K562	blood:
2	chr7:26456740..26460595-chr7:26476772..26480334,4	K562	blood:
3	chr7:26448654..26450705-chr7:26456619..26460704,3	K562	blood:
4	chr7:26459230..26461137-chr7:26676682..26679366,2	K562	blood:

Variant related genes	Relation type
ENSG00000222004	Chromatin interaction
ENSG00000214870	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1229673	0.87[CHB][hapmap];0.87[JPT][hapmap];0.83[ASN][1000 genomes]
rs1229677	0.87[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs1229678	0.87[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs1229679	0.83[ASN][1000 genomes]
rs1229681	0.85[ASN][1000 genomes]
rs1229684	0.85[ASN][1000 genomes]
rs1997358	0.87[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs1997359	0.87[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs2698729	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34041259	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26440800-26460200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr7:26446000-26471200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr7:26453400-26468400	Weak transcription	Pancreas	Pancrea
4	chr7:26453600-26462600	Weak transcription	Lung	lung
5	chr7:26456000-26460200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr7:26456000-26460200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:26456000-26460400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr7:26456000-26460400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr7:26456000-26460400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr7:26458000-26465400	Weak transcription	Fetal Lung	lung
11	chr7:26458200-26460200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr7:26458200-26463400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr7:26458400-26461400	Enhancers	K562	blood
14	chr7:26459000-26460400	Weak transcription	Fetal Kidney	kidney
15	chr7:26459400-26461400	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr7:26459800-26460600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr7:26459800-26460800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr7:26459800-26460800	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr7:26459800-26460800	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr7:26459800-26461400	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr7:26460000-26460800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr7:26460000-26460800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links