Variant report

Variant	rs192016766
Chromosome Location	chr17:19552808-19552809
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:19549675..19554690-chr17:19558689..19564889,9	MCF-7	breast:
2	chr17:19552711..19555521-chr17:19564350..19566731,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLC47A2-1	chr17:19552686-19553248	ENSG00000264932.1

Variant related genes	Relation type
ENSG00000072210	Chromatin interaction
ENSG00000252349	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428337	chr17:19340045-19585774	Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv482827	chr17:19456848-19645771	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv1061408	chr17:19458185-19613357	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
4	esv2757654	chr17:19485735-19563766	Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
5	esv2758679	chr17:19485735-19563766	Active TSS Genic enhancers Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
6	nsv1055361	chr17:19515267-19582503	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv1062853	chr17:19547912-20206601	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
8	nsv934250	chr17:19551657-19561421	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:19550200-19555200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr17:19550800-19553200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
3	chr17:19551000-19553000	Flanking Active TSS	Primary B cells from cord blood	blood
4	chr17:19551000-19553200	Active TSS	Brain Substantia Nigra	brain
5	chr17:19551000-19553200	Bivalent/Poised TSS	Thymus	Thymus
6	chr17:19551000-19553200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr17:19551000-19553400	Active TSS	H9 Cell Line	embryonic stem cell
8	chr17:19551000-19553400	Active TSS	Ovary	ovary
9	chr17:19551000-19553800	Active TSS	ES-I3 Cell Line	embryonic stem cell
10	chr17:19551000-19553800	Active TSS	Right Ventricle	heart
11	chr17:19551000-19554600	Active TSS	Breast Myoepithelial Primary Cells	Breast
12	chr17:19551200-19553000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr17:19551200-19553200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr17:19551200-19553200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
15	chr17:19551200-19553200	Active TSS	Colon Smooth Muscle	Colon
16	chr17:19551200-19553200	Active TSS	Left Ventricle	heart
17	chr17:19551200-19553600	Active TSS	Lung	lung
18	chr17:19551200-19553800	Active TSS	Brain Angular Gyrus	brain
19	chr17:19551200-19554000	Active TSS	Aorta	Aorta
20	chr17:19551200-19554200	Active TSS	Brain Inferior Temporal Lobe	brain
21	chr17:19551200-19554600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr17:19551200-19554800	Active TSS	Esophagus	oesophagus
23	chr17:19551200-19554800	Active TSS	Right Atrium	heart
24	chr17:19551400-19553000	Active TSS	Duodenum Smooth Muscle	Duodenum
25	chr17:19551400-19553000	Active TSS	Fetal Intestine Small	intestine
26	chr17:19551400-19553000	Active TSS	Fetal Lung	lung
27	chr17:19551400-19553000	Active TSS	Rectal Mucosa Donor 29	rectum
28	chr17:19551400-19553200	Active TSS	Stomach Mucosa	stomach
29	chr17:19551400-19553400	Active TSS	Psoas Muscle	Psoas
30	chr17:19551400-19553400	Active TSS	Rectal Smooth Muscle	rectum
31	chr17:19551400-19553400	Active TSS	NHDF-Ad	bronchial
32	chr17:19551400-19553600	Active TSS	Muscle Satellite Cultured Cells	--
33	chr17:19551400-19553600	Active TSS	Fetal Intestine Large	intestine
34	chr17:19551400-19553600	Active TSS	Fetal Kidney	kidney
35	chr17:19551400-19553800	Active TSS	HUES64 Cell Line	embryonic stem cell
36	chr17:19551400-19553800	Active TSS	iPS-15b Cell Line	embryonic stem cell
37	chr17:19551400-19553800	Active TSS	Fetal Brain Female	brain
38	chr17:19551400-19554000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr17:19551400-19554400	Active TSS	HUES6 Cell Line	embryonic stem cell
40	chr17:19551400-19554600	Active TSS	Brain Anterior Caudate	brain
41	chr17:19551600-19553000	Active TSS	Fetal Muscle Leg	muscle
42	chr17:19551600-19553000	Active TSS	Skeletal Muscle Male	skeletal muscle
43	chr17:19551600-19553000	Active TSS	HSMM	muscle
44	chr17:19551600-19553000	Active TSS	NHEK	skin
45	chr17:19551600-19553200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
46	chr17:19551600-19553200	Active TSS	Fetal Stomach	stomach
47	chr17:19551600-19553400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr17:19551600-19553600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr17:19551600-19553600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
50	chr17:19551600-19553600	Active TSS	Colonic Mucosa	Colon

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