Variant report

Variant	rs192035980
Chromosome Location	chr12:49414748-49414749
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr12:49414438-49414778	K562	blood:	n/a	n/a
2	POLR2A	chr12:49414360-49414879	PFSK-1	brain:	n/a	n/a
3	POLR2A	chr12:49414474-49414850	GM12878	blood:	n/a	n/a

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:49411250..49414905-chr12:49447359..49450802,6	MCF-7	breast:
2	chr12:49408415..49414757-chr12:49522619..49525582,9	MCF-7	breast:
3	chr12:49410741..49414968-chr12:49656213..49660641,6	K562	blood:
4	chr12:49408338..49419708-chr12:49447252..49460551,38	K562	blood:
5	chr12:49361132..49362678-chr12:49413782..49415312,2	MCF-7	breast:
6	chr12:49368203..49373775-chr12:49410781..49415457,6	K562	blood:
7	chr12:49410733..49415536-chr12:49523564..49526910,8	K562	blood:
8	chr12:49369680..49374710-chr12:49411684..49416052,5	K562	blood:
9	chr12:49409714..49416851-chr12:49447402..49455499,24	MCF-7	breast:
10	chr12:49390223..49391069-chr12:49413217..49414800,4	K562	blood:
11	chr12:49407466..49416688-chr12:49451532..49456163,12	MCF-7	breast:
12	chr12:49411020..49415552-chr12:49523211..49527183,13	K562	blood:
13	chr12:49410141..49415550-chr12:49657481..49661686,9	K562	blood:
14	chr12:49412128..49415221-chr12:49522907..49525212,5	MCF-7	breast:

No data

Variant related genes	Relation type
PRKAG1	TF binding region
ENSG00000258101	Chromatin interaction
ENSG00000258017	Chromatin interaction
ENSG00000167553	Chromatin interaction
ENSG00000200309	Chromatin interaction
ENSG00000123416	Chromatin interaction
ENSG00000167548	Chromatin interaction
ENSG00000200303	Chromatin interaction
ENSG00000125084	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832404	chr12:49258560-49458555	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv1051161	chr12:49314550-49828473	Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Active TSS Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	322 gene(s)	inside rSNPs	diseases
3	nsv541489	chr12:49314550-49828473	Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	322 gene(s)	inside rSNPs	diseases
4	nsv558833	chr12:49358880-49478812	Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
5	nsv1036452	chr12:49376285-49867760	Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	315 gene(s)	inside rSNPs	diseases
6	esv3387384	chr12:49412035-49416433	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	38 gene(s)	inside rSNPs	diseases
7	esv3397588	chr12:49413110-49415658	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	23 gene(s)	inside rSNPs	diseases
8	esv3354957	chr12:49413735-49414983	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:49412600-49415000	Weak transcription	Gastric	stomach
2	chr12:49413000-49415000	Weak transcription	Esophagus	oesophagus
3	chr12:49413000-49415000	Weak transcription	Pancreas	Pancrea
4	chr12:49413000-49415200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr12:49413000-49415200	Weak transcription	Aorta	Aorta
6	chr12:49413000-49415200	Weak transcription	Brain Substantia Nigra	brain
7	chr12:49413000-49415200	Weak transcription	Rectal Smooth Muscle	rectum
8	chr12:49413000-49415600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr12:49413000-49416000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr12:49413000-49453400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr12:49413200-49415000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr12:49413200-49415200	Weak transcription	Right Ventricle	heart
13	chr12:49413200-49415200	Weak transcription	Small Intestine	intestine
14	chr12:49413200-49415800	Weak transcription	HMEC	breast
15	chr12:49413200-49421400	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr12:49413200-49424800	Weak transcription	Right Atrium	heart
17	chr12:49413400-49421600	Weak transcription	Stomach Mucosa	stomach
18	chr12:49413400-49449000	Strong transcription	Fetal Intestine Small	intestine
19	chr12:49413600-49414800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr12:49413600-49414800	Enhancers	Primary hematopoietic stem cells	blood
21	chr12:49413600-49414800	Weak transcription	Left Ventricle	heart
22	chr12:49413600-49414800	Weak transcription	Hela-S3	cervix
23	chr12:49413600-49415000	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr12:49413600-49415000	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr12:49413600-49415000	Weak transcription	NHEK	skin
26	chr12:49413600-49415200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr12:49413600-49415200	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr12:49413600-49415200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr12:49413600-49415200	Weak transcription	Liver	Liver
30	chr12:49413600-49415200	Weak transcription	Duodenum Mucosa	Duodenum
31	chr12:49413600-49415200	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr12:49413600-49415200	Weak transcription	HUVEC	blood vessel
33	chr12:49413600-49415400	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr12:49413600-49415400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr12:49413600-49415400	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr12:49413600-49415600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr12:49413600-49415600	Weak transcription	Brain Angular Gyrus	brain
38	chr12:49413600-49415600	Weak transcription	Fetal Lung	lung
39	chr12:49413600-49415600	Weak transcription	NH-A	brain
40	chr12:49413600-49415800	Weak transcription	Fetal Kidney	kidney
41	chr12:49413600-49415800	Weak transcription	NHDF-Ad	bronchial
42	chr12:49413600-49419600	Weak transcription	Psoas Muscle	Psoas
43	chr12:49413800-49414800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr12:49413800-49415200	Weak transcription	HepG2	liver
45	chr12:49413800-49415400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr12:49413800-49415600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr12:49413800-49416000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr12:49413800-49419000	Weak transcription	Fetal Brain Male	brain
49	chr12:49413800-49444000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr12:49413800-49449200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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