Variant report

Variant	rs1920365
Chromosome Location	chr3:115863204-115863205
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10804521	0.84[ASN][1000 genomes]
rs10804522	0.84[ASN][1000 genomes]
rs12485667	0.84[ASN][1000 genomes]
rs12486465	0.84[ASN][1000 genomes]
rs12488904	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1381065	1.00[ASN][1000 genomes]
rs1461110	0.97[ASN][1000 genomes]
rs1461112	1.00[ASN][1000 genomes]
rs1461113	1.00[ASN][1000 genomes]
rs1461117	0.84[ASN][1000 genomes]
rs1461138	0.84[ASN][1000 genomes]
rs1563933	1.00[ASN][1000 genomes]
rs16824478	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16824491	0.84[ASN][1000 genomes]
rs16824495	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17359	0.84[ASN][1000 genomes]
rs17631108	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17643878	0.84[ASN][1000 genomes]
rs17698500	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17699134	0.90[ASN][1000 genomes]
rs1920363	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1920367	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1920370	0.95[ASN][1000 genomes]
rs1920375	0.94[ASN][1000 genomes]
rs1950085	1.00[ASN][1000 genomes]
rs2141628	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34424845	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4146782	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4261878	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4511899	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4560296	1.00[ASN][1000 genomes]
rs57196061	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57425502	1.00[ASN][1000 genomes]
rs62269187	1.00[ASN][1000 genomes]
rs62269188	0.84[ASN][1000 genomes]
rs62269190	0.84[ASN][1000 genomes]
rs67278926	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67551037	0.84[ASN][1000 genomes]
rs6779886	0.84[ASN][1000 genomes]
rs67853012	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73140910	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73140911	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73140912	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73140913	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73140921	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7614089	0.84[ASN][1000 genomes]
rs7639126	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7639609	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012260	chr3:115680931-115935968	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2756413	chr3:115721898-115908480	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv2751975	chr3:115766285-115902901	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv2755046	chr3:115818840-115942952	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv591345	chr3:115819376-115902901	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2752728	chr3:115833212-115902901	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:115855200-115864200	Weak transcription	Fetal Lung	lung
2	chr3:115859400-115866000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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