Variant report

Variant	rs192065946
Chromosome Location	chr14:67980831-67980832
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:67954053..67956925-chr14:67980005..67982672,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198133	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456331	chr14:67732861-68103780	Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv564961	chr14:67732861-68103780	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv470651	chr14:67732861-68113293	Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv902066	chr14:67873128-68103780	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	nsv1320	chr14:67938724-67984157	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	esv3357417	chr14:67980624-67983572	Flanking Active TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:67956200-67981000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr14:67975800-67981000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr14:67977800-67981000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr14:67977800-67981000	Weak transcription	HMEC	breast
5	chr14:67978000-67981000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr14:67978200-67981200	Weak transcription	Hela-S3	cervix
7	chr14:67979000-67981200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr14:67979200-67981000	Enhancers	Pancreas	Pancrea
9	chr14:67979400-67981000	Enhancers	Primary B cells from cord blood	blood
10	chr14:67979400-67981000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr14:67979400-67981200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr14:67979400-67981400	Enhancers	Spleen	Spleen
13	chr14:67979400-67981400	Enhancers	GM12878-XiMat	blood
14	chr14:67979600-67981200	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr14:67979800-67981200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr14:67979800-67982600	Enhancers	Fetal Brain Male	brain
17	chr14:67980000-67981200	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr14:67980200-67981000	Enhancers	Primary T cells fromperipheralblood	blood
19	chr14:67980200-67981000	Flanking Active TSS	Fetal Intestine Large	intestine
20	chr14:67980200-67981400	Flanking Active TSS	Fetal Intestine Small	intestine
21	chr14:67980200-67981400	Enhancers	Small Intestine	intestine
22	chr14:67980200-67981600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr14:67980400-67981000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
24	chr14:67980400-67981000	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr14:67980400-67981200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr14:67980400-67981200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr14:67980400-67981400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr14:67980400-67981400	Flanking Active TSS	Brain Angular Gyrus	brain
29	chr14:67980400-67981400	Flanking Active TSS	Brain Cingulate Gyrus	brain
30	chr14:67980400-67981400	Flanking Active TSS	Duodenum Mucosa	Duodenum
31	chr14:67980400-67981400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
32	chr14:67980400-67981600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
33	chr14:67980600-67981000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr14:67980600-67981000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr14:67980600-67981000	Enhancers	Rectal Mucosa Donor 31	rectum
36	chr14:67980600-67981200	Enhancers	Primary monocytes fromperipheralblood	blood
37	chr14:67980600-67981200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
38	chr14:67980600-67981200	Enhancers	Fetal Thymus	thymus
39	chr14:67980600-67981400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
40	chr14:67980600-67981400	Flanking Active TSS	Fetal Brain Female	brain
41	chr14:67980600-67981400	Enhancers	Fetal Lung	lung
42	chr14:67980600-67981400	Flanking Bivalent TSS/Enh	HepG2	liver
43	chr14:67980600-67981600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
44	chr14:67980600-67982600	Active TSS	Pancreatic Islets	Pancreatic Islet
45	chr14:67980800-67981000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
46	chr14:67980800-67981000	Enhancers	Cortex derived primary cultured neurospheres	brain
47	chr14:67980800-67981000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr14:67980800-67981000	Enhancers	Adipose Nuclei	Adipose
49	chr14:67980800-67981000	Flanking Active TSS	Brain Anterior Caudate	brain
50	chr14:67980800-67981000	Enhancers	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links