Variant report

Variant	rs192097724
Chromosome Location	chr5:106738629-106738630
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030118	chr5:106006097-106847949	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1034276	chr5:106461538-106944163	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv537851	chr5:106461538-106944163	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv820161	chr5:106737870-106739081	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106720400-106740800	Weak transcription	Aorta	Aorta
2	chr5:106725800-106740400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr5:106732200-106739400	Weak transcription	GM12878-XiMat	blood
4	chr5:106732200-106753200	Weak transcription	Fetal Kidney	kidney
5	chr5:106733600-106744800	Weak transcription	Right Ventricle	heart
6	chr5:106735200-106741200	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr5:106735200-106741400	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr5:106736000-106740000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:106736000-106740000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr5:106736200-106742200	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr5:106736400-106740200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:106736400-106741200	Enhancers	A549	lung
13	chr5:106736600-106740600	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr5:106736800-106738800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr5:106736800-106740000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr5:106736800-106740200	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr5:106737200-106739600	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr5:106737200-106740000	Enhancers	Brain Germinal Matrix	brain
19	chr5:106737400-106738800	Enhancers	Fetal Muscle Leg	muscle
20	chr5:106737400-106739200	Enhancers	Fetal Brain Male	brain
21	chr5:106737400-106739600	Enhancers	Brain Anterior Caudate	brain
22	chr5:106737400-106740400	Enhancers	HMEC	breast
23	chr5:106737400-106741400	Enhancers	Fetal Heart	heart
24	chr5:106737600-106738800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
25	chr5:106737600-106738800	Enhancers	Fetal Stomach	stomach
26	chr5:106737600-106739200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr5:106737600-106740800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr5:106737800-106739000	Enhancers	H1 Cell Line	embryonic stem cell
29	chr5:106737800-106739000	Enhancers	Placenta Amnion	Placenta Amnion
30	chr5:106737800-106739600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr5:106738000-106738800	Active TSS	Pancreatic Islets	Pancreatic Islet
32	chr5:106738000-106740200	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr5:106738200-106738800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr5:106738200-106738800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr5:106738200-106738800	Enhancers	NHDF-Ad	bronchial
36	chr5:106738200-106739000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr5:106738200-106739000	Enhancers	H9 Cell Line	embryonic stem cell
38	chr5:106738200-106739000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr5:106738200-106739000	Enhancers	Brain Cingulate Gyrus	brain
40	chr5:106738200-106739000	Enhancers	Ovary	ovary
41	chr5:106738200-106739600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
42	chr5:106738200-106739600	Enhancers	Muscle Satellite Cultured Cells	--
43	chr5:106738200-106739800	Enhancers	HSMM	muscle
44	chr5:106738200-106740800	Enhancers	NHEK	skin
45	chr5:106738200-106741200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr5:106738400-106738800	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
47	chr5:106738400-106738800	Flanking Active TSS	Brain Hippocampus Middle	brain
48	chr5:106738400-106739000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
49	chr5:106738400-106739000	Enhancers	Left Ventricle	heart
50	chr5:106738400-106739600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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