Variant report

Variant	rs192164342
Chromosome Location	chr10:45423377-45423378
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:45406644..45408622-chr10:45422950..45424971,2	K562	blood:
2	chr10:45423081..45426439-chr10:45487238..45490931,4	K562	blood:

Variant related genes	Relation type
ENSG00000187783	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831845	chr10:45300268-45460395	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv831846	chr10:45322236-45556370	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv466909	chr10:45408011-45446791	Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv550714	chr10:45408011-45446791	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv3374788	chr10:45419346-45423644	Genic enhancers Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv818757	chr10:45420076-45431321	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	esv3513804	chr10:45422810-45425594	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv3321506	chr10:45423106-45424228	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3321517	chr10:45423106-45424228	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv3513806	chr10:45423131-45424240	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv3513805	chr10:45423172-45424195	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv3513808	chr10:45423228-45424151	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45410200-45430400	Weak transcription	Gastric	stomach
2	chr10:45413400-45428200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr10:45417000-45434000	Weak transcription	Fetal Brain Female	brain
4	chr10:45418800-45424800	Weak transcription	Colonic Mucosa	Colon
5	chr10:45420400-45428000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr10:45420400-45428200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:45421000-45427800	Weak transcription	Right Ventricle	heart
8	chr10:45421600-45428000	Weak transcription	Fetal Heart	heart
9	chr10:45421800-45425200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:45422200-45423400	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr10:45422200-45423600	Enhancers	Fetal Intestine Large	intestine
12	chr10:45422200-45423600	Enhancers	HSMMtube	muscle
13	chr10:45422400-45423400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr10:45422400-45423400	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr10:45422400-45423400	Enhancers	Duodenum Mucosa	Duodenum
16	chr10:45422400-45423400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr10:45422400-45423400	Enhancers	Pancreas	Pancrea
18	chr10:45422400-45423600	Enhancers	Fetal Intestine Small	intestine
19	chr10:45422400-45423600	Enhancers	Fetal Muscle Leg	muscle
20	chr10:45422600-45427800	Weak transcription	Spleen	Spleen
21	chr10:45422800-45423400	Enhancers	Liver	Liver
22	chr10:45422800-45423400	Enhancers	Fetal Muscle Trunk	muscle
23	chr10:45423000-45423400	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr10:45423000-45423400	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr10:45423000-45428200	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr10:45423200-45423400	Enhancers	Lung	lung
27	chr10:45423200-45423800	Enhancers	HepG2	liver
28	chr10:45423200-45427800	Weak transcription	Adipose Nuclei	Adipose
29	chr10:45423200-45428600	Weak transcription	Esophagus	oesophagus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links