Variant report

Variant	rs1921804
Chromosome Location	chr2:206170649-206170650
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10199814	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11690400	0.81[AFR][1000 genomes]
rs13394469	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13400802	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16837173	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16837202	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1921792	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1921793	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4119080	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57128422	1.00[EUR][1000 genomes]
rs58345531	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59179287	1.00[EUR][1000 genomes]
rs59554665	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59827121	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60989157	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61131067	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6718851	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1012780	chr2:206124954-206546271	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:206157000-206170800	Weak transcription	Aorta	Aorta
2	chr2:206157400-206170800	Weak transcription	Pancreas	Pancrea
3	chr2:206161200-206177000	Weak transcription	Colon Smooth Muscle	Colon
4	chr2:206163800-206177200	Weak transcription	Fetal Lung	lung
5	chr2:206165200-206171000	Weak transcription	Left Ventricle	heart
6	chr2:206165600-206177200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr2:206166600-206171600	Weak transcription	Liver	Liver
8	chr2:206167600-206172400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr2:206168600-206172400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr2:206168600-206173400	Weak transcription	Ovary	ovary
11	chr2:206168600-206190600	Weak transcription	Fetal Intestine Large	intestine
12	chr2:206168800-206171400	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr2:206168800-206176200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr2:206169800-206171000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr2:206170400-206171000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
16	chr2:206170600-206171000	ZNF genes & repeats	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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