Variant report

Variant	rs1921969
Chromosome Location	chrX:31373423-31373424
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2692996	0.82[ASW][hapmap];0.90[CHB][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.93[YRI][hapmap]
rs2704913	0.95[CEU][hapmap];0.90[CHB][hapmap];0.88[GIH][hapmap];0.91[JPT][hapmap];0.91[TSI][hapmap]
rs2733459	0.80[CHB][hapmap];0.82[JPT][hapmap]
rs2733462	0.95[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap]
rs5927721	0.90[CEU][hapmap];0.91[GIH][hapmap]
rs5927722	0.90[CEU][hapmap]
rs5927723	0.81[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530449	chrX:30962926-31375215	Strong transcription Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv869389	chrX:31207964-31963300	Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv481896	chrX:31212683-31546984	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3407256	chrX:31214281-31548379	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv481964	chrX:31270220-31672751	Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv2758567	chrX:31363616-31519148	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:31369200-31373600	Weak transcription	Liver	Liver
2	chrX:31369200-31374200	Weak transcription	Gastric	stomach
3	chrX:31370200-31374600	Enhancers	Hela-S3	cervix
4	chrX:31371600-31373600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chrX:31371600-31374200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chrX:31371800-31373600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chrX:31371800-31375600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chrX:31372000-31373600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chrX:31372000-31374000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chrX:31372000-31375200	Weak transcription	Fetal Heart	heart
11	chrX:31372800-31373800	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chrX:31373000-31375800	Enhancers	HepG2	liver
13	chrX:31373400-31376400	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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