Variant report

Variant	rs192244894
Chromosome Location	chr10:45419962-45419963
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831845	chr10:45300268-45460395	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv831846	chr10:45322236-45556370	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv466909	chr10:45408011-45446791	Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv550714	chr10:45408011-45446791	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv3374788	chr10:45419346-45423644	Genic enhancers Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45407800-45422800	Weak transcription	Ovary	ovary
2	chr10:45410200-45430400	Weak transcription	Gastric	stomach
3	chr10:45413200-45420400	Weak transcription	Fetal Kidney	kidney
4	chr10:45413400-45428200	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr10:45415400-45420000	Weak transcription	HSMMtube	muscle
6	chr10:45417000-45434000	Weak transcription	Fetal Brain Female	brain
7	chr10:45417800-45422400	Weak transcription	Duodenum Mucosa	Duodenum
8	chr10:45418800-45420800	Weak transcription	Spleen	Spleen
9	chr10:45418800-45424800	Weak transcription	Colonic Mucosa	Colon
10	chr10:45419200-45420200	Weak transcription	Lung	lung
11	chr10:45419200-45420200	Weak transcription	Pancreas	Pancrea
12	chr10:45419400-45420800	Enhancers	Fetal Thymus	thymus
13	chr10:45419600-45420400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:45419600-45421000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr10:45419800-45420600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr10:45419800-45421000	Enhancers	Fetal Muscle Trunk	muscle
17	chr10:45419800-45421200	Enhancers	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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