Variant report

Variant	rs192257634
Chromosome Location	chr6:33929544-33929545
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
2	nsv462899	chr6:33880480-33944014	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv602841	chr6:33880480-33944014	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv5252	chr6:33919447-33955380	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv602842	chr6:33927311-33942228	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv527079	chr6:33927311-33944014	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv437504	chr6:33928390-33944014	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv437505	chr6:33928390-33944014	Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv998264	chr6:33928881-33934613	Bivalent Enhancer Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33924800-33930000	Enhancers	Fetal Brain Male	brain
2	chr6:33926000-33931400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:33926000-33931600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:33926200-33930000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:33926400-33931000	Enhancers	NHEK	skin
6	chr6:33927000-33942400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:33927200-33930000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr6:33927600-33931000	Enhancers	HMEC	breast
9	chr6:33928200-33929800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr6:33928600-33929600	Weak transcription	Brain Germinal Matrix	brain
11	chr6:33928800-33930000	Weak transcription	Fetal Brain Female	brain
12	chr6:33929200-33929600	Bivalent Enhancer	Fetal Stomach	stomach
13	chr6:33929400-33930000	Enhancers	Esophagus	oesophagus
14	chr6:33929400-33931200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links