Variant report

Variant	rs192265543
Chromosome Location	chr6:25349878-25349879
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:25348848..25351253-chr6:25357378..25359021,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883485	chr6:25259137-25437986	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv883486	chr6:25260434-25422369	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv883487	chr6:25280119-25508868	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv830612	chr6:25342408-25509758	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv601168	chr6:25346334-25393306	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv275059	chr6:25346985-25351263	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv1792912	chr6:25349637-25354122	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:25335200-25359800	Weak transcription	Thymus	Thymus
2	chr6:25336800-25350200	Weak transcription	Lung	lung
3	chr6:25336800-25354600	Weak transcription	Right Atrium	heart
4	chr6:25337400-25357800	Weak transcription	NHEK	skin
5	chr6:25341000-25352800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr6:25341000-25359400	Weak transcription	Pancreas	Pancrea
7	chr6:25342400-25350600	Weak transcription	HSMMtube	muscle
8	chr6:25342800-25351800	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr6:25342800-25354400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:25343000-25352600	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr6:25343800-25350600	Weak transcription	Fetal Intestine Large	intestine
12	chr6:25343800-25354000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:25344000-25350600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:25346600-25350400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:25346600-25359400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr6:25346800-25350600	Weak transcription	Small Intestine	intestine
17	chr6:25346800-25351800	Weak transcription	Fetal Intestine Small	intestine
18	chr6:25346800-25352800	Weak transcription	Duodenum Mucosa	Duodenum
19	chr6:25346800-25359200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr6:25347000-25350400	Weak transcription	Fetal Lung	lung
21	chr6:25347000-25352400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr6:25347000-25354200	Weak transcription	Stomach Mucosa	stomach
23	chr6:25347000-25359400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr6:25347200-25351600	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr6:25349200-25359200	Weak transcription	Ovary	ovary
26	chr6:25349400-25351200	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr6:25349600-25350000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr6:25349600-25350200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr6:25349600-25354200	Weak transcription	Aorta	Aorta

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