Variant report

Variant	rs1922673
Chromosome Location	chr5:151636937-151636938
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs57174634	0.93[AFR][1000 genomes]
rs59485567	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60548635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6579923	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6879564	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6880036	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6897686	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9688300	0.82[AFR][1000 genomes]
rs9688308	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830519	chr5:151588627-151800192	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151635200-151639400	Weak transcription	Left Ventricle	heart
2	chr5:151636400-151637200	Enhancers	Pancreatic Islets	Pancreatic Islet

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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