Variant report

Variant	rs192307363
Chromosome Location	chr7:112030801-112030802
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:112030505..112033411-chr7:112090112..112091685,2	MCF-7	breast:
2	chr7:112029526..112032512-chr7:112089416..112091655,2	K562	blood:
3	chr7:112029372..112031621-chr7:112036798..112039526,2	MCF-7	breast:
4	chr7:112023462..112026199-chr7:112030712..112034136,5	MCF-7	breast:
5	chr7:111857821..111859574-chr7:112030551..112032739,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000006652	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532335	chr7:111411990-112054905	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
3	nsv1020212	chr7:111944370-112032596	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv831097	chr7:112000837-112113173	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
5	esv3325611	chr7:112030791-112032839	Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112024200-112031400	Weak transcription	Pancreas	Pancrea
2	chr7:112025400-112031400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:112027000-112032000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:112027200-112031000	Weak transcription	Fetal Kidney	kidney
5	chr7:112030600-112031000	Enhancers	Psoas Muscle	Psoas
6	chr7:112030600-112031000	Enhancers	Spleen	Spleen
7	chr7:112030800-112031000	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr7:112030800-112031000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
9	chr7:112030800-112031000	Enhancers	Fetal Intestine Large	intestine
10	chr7:112030800-112031000	Enhancers	Fetal Intestine Small	intestine
11	chr7:112030800-112031000	Enhancers	HepG2	liver
12	chr7:112030800-112031200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
13	chr7:112030800-112031200	Enhancers	Brain Cingulate Gyrus	brain
14	chr7:112030800-112031200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
15	chr7:112030800-112031400	Flanking Active TSS	Dnd41	blood
16	chr7:112030800-112031600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr7:112030800-112032200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr7:112030800-112032200	Active TSS	Primary T regulatory cells fromperipheralblood	blood
19	chr7:112030800-112032200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr7:112030800-112032200	Active TSS	Hela-S3	cervix
21	chr7:112030800-112032400	Active TSS	Breast Myoepithelial Primary Cells	Breast
22	chr7:112030800-112032600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain

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