Variant report

Variant	rs192400232
Chromosome Location	chr7:2781780-2781781
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:2772073..2775942-chr7:2781505..2783799,3	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029250	chr7:2722737-2881021	Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv538652	chr7:2722737-2881021	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1024023	chr7:2726210-2829581	Strong transcription Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv538653	chr7:2726210-2829581	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv1015700	chr7:2753965-2945848	Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
6	nsv966746	chr7:2781545-2797621	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:2752400-2796000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:2761000-2796200	Weak transcription	Hela-S3	cervix
3	chr7:2761000-2797000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr7:2771200-2782200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr7:2771200-2783200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr7:2771200-2796200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr7:2771400-2782400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr7:2771400-2785000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr7:2771400-2796200	Weak transcription	NHEK	skin
10	chr7:2771600-2781800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr7:2772800-2783200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr7:2773200-2782400	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr7:2773200-2783200	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr7:2773200-2796200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr7:2773200-2796400	Weak transcription	NH-A	brain
16	chr7:2773200-2797000	Weak transcription	Pancreas	Pancrea
17	chr7:2773600-2796400	Weak transcription	Osteobl	bone
18	chr7:2775200-2783200	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr7:2775200-2783200	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr7:2775200-2790600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr7:2775200-2791600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr7:2775200-2796200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr7:2775400-2782000	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr7:2775400-2789800	Weak transcription	Ovary	ovary
25	chr7:2775400-2790000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr7:2775400-2797400	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr7:2775400-2801200	Weak transcription	Primary T cells from cord blood	blood
28	chr7:2775600-2782400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr7:2775800-2796400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr7:2775800-2796400	Weak transcription	HSMM	muscle
31	chr7:2776200-2782800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr7:2776200-2797000	Weak transcription	Spleen	Spleen
33	chr7:2776400-2783400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr7:2776600-2784000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr7:2776800-2782000	Weak transcription	Fetal Heart	heart
36	chr7:2776800-2782600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr7:2776800-2783200	Weak transcription	Fetal Intestine Large	intestine
38	chr7:2776800-2793600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr7:2776800-2796200	Weak transcription	HepG2	liver
40	chr7:2777600-2796200	Weak transcription	Dnd41	blood
41	chr7:2778200-2782000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr7:2778200-2796400	Weak transcription	Psoas Muscle	Psoas
43	chr7:2778600-2790800	Weak transcription	Adipose Nuclei	Adipose
44	chr7:2778600-2794800	Weak transcription	Primary B cells from cord blood	blood
45	chr7:2778600-2796200	Weak transcription	Fetal Lung	lung
46	chr7:2778600-2796400	Weak transcription	Fetal Muscle Trunk	muscle
47	chr7:2778800-2782000	Weak transcription	Left Ventricle	heart
48	chr7:2778800-2782000	Weak transcription	Lung	lung
49	chr7:2778800-2782600	Weak transcription	Right Atrium	heart
50	chr7:2778800-2782800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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