Variant report

Variant	rs192406514
Chromosome Location	chr11:64183197-64183198
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:64183154-64183204	SKMC	muscle:	n/a
2	chr11:64183154-64183204	Jurkat	blood:	n/a
3	chr11:64183154-64183204	AG09309	skin:	n/a
4	chr11:64183154-64183204	MCF-7	breast:	n/a
5	chr11:64183154-64183204	BJ	skin:	n/a
6	chr11:64183154-64183204	IMR90	lung:	fetal
7	chr11:64183154-64183204	SK-N-MC	brain:	n/a
8	chr11:64183154-64183204	GM12878	blood:	n/a
9	chr11:64183154-64183204	MCF10A-Er-Src	breast:	n/a
10	chr11:64183154-64183204	AG04449	skin:	fetal
11	chr11:64183154-64183204	AG09319	gingival:	n/a
12	chr11:64183154-64183204	T-47D	breast:	n/a
13	chr11:64183154-64183204	CMK	blood:	n/a
14	chr11:64183154-64183204	RPTEC	kidney:	n/a
15	chr11:64183154-64183204	SK-N-SH_RA	brain:	n/a
16	chr11:64183154-64183204	AG10803	skin:	n/a
17	chr11:64183154-64183204	NHBE	bronchial:	n/a
18	chr11:64183154-64183204	HUVEC	blood vessel:	n/a
19	chr11:64183154-64183204	HMEC	breast:	n/a
20	chr11:64183154-64183204	HIPEpiC	eye:	n/a
21	chr11:64183154-64183204	A549	lung:	n/a
22	chr11:64183154-64183204	ovcar-3	ovarian:	n/a
23	chr11:64183154-64183204	NT2-D1	testis:	n/a
24	chr11:64183154-64183204	GM06990	blood:	n/a
25	chr11:64183154-64183204	BE2_C	brain:	n/a
26	chr11:64183154-64183204	ECC-1	luminal epithelium:	n/a
27	chr11:64183154-64183204	H1-hESC	embryonic stem cell:	embryo
28	chr11:64183154-64183204	HCF	heart:	n/a
29	chr11:64183154-64183204	ProgFib	skin:	n/a
30	chr11:64183154-64183204	HNPCEpiC	eye:	n/a
31	chr11:64183154-64183204	HRPEpiC	eye:	n/a
32	chr11:64183154-64183204	SAEC	small airway:	n/a
33	chr11:64183154-64183204	PANC-1	pancreas:	n/a
34	chr11:64183154-64183204	HepG2	liver:	n/a
35	chr11:64183154-64183204	PrEC	prostate:	n/a
36	chr11:64183154-64183204	NB4	blood:	n/a
37	chr11:64183154-64183204	HEK293	kidney:	embryo
38	chr11:64183154-64183204	HRCEpiC	kidney:	n/a
39	chr11:64183154-64183204	Hela-S3	cervix:	n/a
40	chr11:64183154-64183204	Caco-2	colon:	n/a
41	chr11:64183154-64183204	AG04450	lung:	fetal
42	chr11:64183154-64183204	HCM	heart:	n/a
43	chr11:64183154-64183204	HAEpiC	amniotic membrane:	n/a
44	chr11:64183154-64183204	SK-N-SH	brain:	n/a
45	chr11:64183154-64183204	GM19239	blood:	n/a
46	chr11:64183154-64183204	NH-A	brain:	n/a
47	chr11:64183154-64183204	HCT-116	colon:	n/a
48	chr11:64183154-64183204	HEEpiC	esophagus:	n/a
49	chr11:64183154-64183204	HRE	kidney:	n/a
50	chr11:64183154-64183204	GM12892	blood:	n/a

No data

Variant related genes	Relation type
ENSG00000231492	CpG island

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832187	chr11:64121969-64312300	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	esv3373822	chr11:64182426-64184924	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64178000-64184200	Weak transcription	Right Atrium	heart
2	chr11:64182200-64183800	Enhancers	Spleen	Spleen
3	chr11:64182400-64183200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
4	chr11:64182400-64183200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr11:64182400-64183200	Enhancers	Fetal Heart	heart
6	chr11:64182400-64183400	Enhancers	Fetal Lung	lung
7	chr11:64182400-64183600	Enhancers	H1 Cell Line	embryonic stem cell
8	chr11:64182400-64183600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:64182400-64183800	Enhancers	Placenta	Placenta
10	chr11:64182400-64184000	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr11:64182400-64184000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr11:64182600-64183200	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr11:64182600-64183200	Enhancers	Fetal Muscle Trunk	muscle
14	chr11:64182600-64183200	Enhancers	Fetal Thymus	thymus
15	chr11:64182600-64183400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:64182600-64183400	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr11:64182600-64183400	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr11:64182600-64183400	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr11:64182600-64183600	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr11:64182600-64183800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr11:64182800-64183200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr11:64182800-64183200	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr11:64182800-64196000	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr11:64183000-64183600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links