Variant report

Variant	rs192407889
Chromosome Location	chr12:56003685-56003686
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr12:56003640-56003703	GM13977	blood:	n/a	n/a

Variant related genes	Relation type
OR6U2P	TF binding region

Extended variants
information (count: 25 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv559001	chr12:55507465-56057708	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv948625	chr12:55838718-56118833	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv983247	chr12:56000681-56011266	Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3509550	chr12:56001135-56005383	Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
5	esv1815294	chr12:56001327-56004059	Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
6	esv2488219	chr12:56001465-56004826	Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
7	esv3509554	chr12:56001526-56004682	Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
8	esv3487453	chr12:56001585-56005333	Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
9	esv3436833	chr12:56001585-56006083	Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
10	esv2216398	chr12:56002098-56004416	Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
11	esv3487341	chr12:56002150-56004349	Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
12	esv3509553	chr12:56002164-56004334	Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
13	esv3509549	chr12:56002198-56004279	Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
14	esv3487308	chr12:56002201-56004315	Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
15	esv3487330	chr12:56002202-56004315	Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
16	esv3487454	chr12:56002223-56004295	Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
17	esv3487319	chr12:56002224-56004263	Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
18	esv3487451	chr12:56002228-56004292	Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
19	esv3487297	chr12:56002266-56004250	Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
20	esv3509551	chr12:56002276-56004251	Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
21	esv13228	chr12:56002278-56004219	Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
22	esv3487352	chr12:56002281-56004246	Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
23	esv3487455	chr12:56002281-56004246	Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
24	esv3509555	chr12:56002281-56004246	Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
25	esv3487450	chr12:56002297-56004353	Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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