Variant report

Variant	rs192431297
Chromosome Location	chr6:107090420-107090421
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532047	chr6:106591482-107143252	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv970157	chr6:107089574-107090964	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:107078600-107090600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:107078600-107090600	Weak transcription	Fetal Brain Female	brain
3	chr6:107078600-107092000	Weak transcription	Brain Germinal Matrix	brain
4	chr6:107078600-107092600	Weak transcription	Brain Anterior Caudate	brain
5	chr6:107078600-107093000	Weak transcription	Colonic Mucosa	Colon
6	chr6:107078600-107100200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr6:107078600-107100400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr6:107078600-107103800	Weak transcription	Fetal Brain Male	brain
9	chr6:107078600-107104200	Weak transcription	Brain Angular Gyrus	brain
10	chr6:107078600-107106200	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr6:107078600-107106600	Weak transcription	NH-A	brain
12	chr6:107078600-107110200	Weak transcription	NHLF	lung
13	chr6:107078600-107110800	Weak transcription	Fetal Heart	heart
14	chr6:107078600-107115200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr6:107078600-107125200	Weak transcription	Stomach Mucosa	stomach
16	chr6:107078800-107090600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr6:107078800-107090600	Weak transcription	Hela-S3	cervix
18	chr6:107078800-107092000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr6:107078800-107093600	Weak transcription	NHEK	skin
20	chr6:107079400-107091000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:107079400-107092600	Weak transcription	HMEC	breast
22	chr6:107079400-107092800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:107079600-107090600	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr6:107079600-107090800	Weak transcription	Osteobl	bone
25	chr6:107079600-107092400	Weak transcription	Colon Smooth Muscle	Colon
26	chr6:107081000-107092800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr6:107082600-107091800	Weak transcription	Lung	lung
28	chr6:107085000-107091200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr6:107085000-107112800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:107085400-107090800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr6:107085400-107100200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr6:107085400-107114000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr6:107086000-107094200	Strong transcription	Primary T cells from cord blood	blood
34	chr6:107086400-107104400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr6:107086600-107092600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr6:107086600-107094400	Strong transcription	Primary T helper cells PMA-I stimulated	--
37	chr6:107086600-107098200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr6:107086800-107091200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr6:107086800-107091200	Weak transcription	Psoas Muscle	Psoas
40	chr6:107087200-107112600	Strong transcription	Primary T helper cells fromperipheralblood	blood
41	chr6:107087400-107094200	Weak transcription	A549	lung
42	chr6:107087400-107106200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr6:107087600-107095600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
44	chr6:107087800-107094400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr6:107087800-107094400	Strong transcription	Duodenum Mucosa	Duodenum
46	chr6:107087800-107094600	Strong transcription	Primary T cells fromperipheralblood	blood
47	chr6:107087800-107094600	Strong transcription	Rectal Mucosa Donor 31	rectum
48	chr6:107087800-107094800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr6:107087800-107095400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
50	chr6:107087800-107104000	Strong transcription	Dnd41	blood

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