Variant report

Variant	rs192461677
Chromosome Location	chr18:24811000-24811001
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909474	chr18:24683823-24832023	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv530515	chr18:24704459-24883897	Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3370751	chr18:24809654-24813952	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24804000-24811200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr18:24804800-24811200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr18:24806800-24811200	Weak transcription	NHEK	skin
4	chr18:24807800-24811000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr18:24807800-24811200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr18:24808000-24811000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr18:24808000-24811200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr18:24808200-24811000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr18:24808200-24811000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr18:24808200-24811200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr18:24808200-24811200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr18:24809200-24811000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr18:24809800-24811200	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr18:24810400-24813000	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr18:24811000-24812000	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr18:24811000-24812000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr18:24811000-24812800	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr18:24811000-24813400	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr18:24811000-24814000	Enhancers	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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