Variant report

Variant	rs1924739
Chromosome Location	chr1:187091744-187091745
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10494589	1.00[EUR][1000 genomes]
rs11802961	1.00[EUR][1000 genomes]
rs11806153	1.00[EUR][1000 genomes]
rs12720577	1.00[EUR][1000 genomes]
rs1574622	1.00[EUR][1000 genomes]
rs16826324	1.00[EUR][1000 genomes]
rs1924726	1.00[EUR][1000 genomes]
rs1924727	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55766137	1.00[EUR][1000 genomes]
rs74135235	1.00[EUR][1000 genomes]
rs74135236	1.00[EUR][1000 genomes]
rs74135251	0.83[AFR][1000 genomes]
rs74135252	1.00[EUR][1000 genomes]
rs74135254	0.83[AFR][1000 genomes]
rs74135255	0.83[AFR][1000 genomes]
rs74137107	0.82[AFR][1000 genomes]
rs74137109	0.82[AFR][1000 genomes]
rs74137114	0.82[AFR][1000 genomes]
rs74137116	0.81[AFR][1000 genomes]
rs7547053	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872590	chr1:186557453-187500338	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv492108	chr1:186969793-187745761	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv999634	chr1:186979839-187759289	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv535225	chr1:186979839-187759289	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	esv2750817	chr1:187070355-187989594	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:187090800-187092200	Enhancers	Fetal Brain Female	brain
2	chr1:187090800-187093200	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr1:187091600-187092000	Enhancers	Brain Angular Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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