Variant report

Variant	rs192529825
Chromosome Location	chr6:132549374-132549375
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1024527	chr6:132532941-132571889	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv823841	chr6:132549331-132549920	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132548000-132550800	Enhancers	Osteobl	bone
2	chr6:132548400-132549400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:132548800-132549400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:132548800-132549400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr6:132548800-132549400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:132548800-132550800	Enhancers	NH-A	brain
7	chr6:132549200-132549600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:132549200-132550800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr6:132549200-132551000	Enhancers	HSMM	muscle
10	chr6:132549200-132551000	Enhancers	HSMMtube	muscle
11	chr6:132549200-132553000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links