Variant report

Variant	rs192574660
Chromosome Location	chr13:48032959-48032960
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763019	chr13:47348229-48123447	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv3394678	chr13:47678184-48039379	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3450125	chr13:47919050-48236684	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv455879	chr13:47919611-48190106	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv561588	chr13:47943829-48190106	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv2461229	chr13:48032464-48033865	Weak transcription Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48029800-48033200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr13:48029800-48033400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr13:48029800-48033600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr13:48029800-48033600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr13:48029800-48033800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr13:48029800-48037400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr13:48030000-48033600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr13:48030000-48033600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr13:48030200-48033400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr13:48031800-48033400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr13:48031800-48033400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr13:48031800-48033400	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr13:48032000-48036000	Weak transcription	Hela-S3	cervix

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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