Variant report

Variant	rs192576261
Chromosome Location	chr6:5726626-5726627
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:5721926..5724566-chr6:5725553..5727803,3	K562	blood:
2	chr6:5725977..5728303-chr6:5734560..5736666,2	K562	blood:

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522675	chr6:5726231-5732820	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5717400-5729000	Weak transcription	Fetal Stomach	stomach
2	chr6:5717600-5729000	Weak transcription	Fetal Lung	lung
3	chr6:5717600-5729600	Weak transcription	Brain Substantia Nigra	brain
4	chr6:5718000-5729200	Weak transcription	NHEK	skin
5	chr6:5723000-5744200	Weak transcription	Right Ventricle	heart
6	chr6:5723800-5729000	Weak transcription	Lung	lung
7	chr6:5724200-5728000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr6:5724200-5729200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr6:5724600-5727200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:5724600-5727800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:5724600-5728000	Weak transcription	Fetal Brain Male	brain
12	chr6:5724600-5728200	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr6:5724600-5728800	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr6:5724600-5729000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr6:5724600-5729200	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr6:5724600-5729200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr6:5724600-5729200	Weak transcription	NH-A	brain
18	chr6:5724800-5727000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr6:5724800-5729200	Weak transcription	Osteobl	bone
20	chr6:5724800-5729400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:5725000-5727000	Weak transcription	Fetal Muscle Trunk	muscle
22	chr6:5725000-5727200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:5725000-5727200	Weak transcription	Fetal Muscle Leg	muscle
24	chr6:5725000-5727200	Weak transcription	Spleen	Spleen
25	chr6:5725000-5727800	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr6:5725000-5728400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr6:5725000-5729000	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr6:5725000-5729800	Enhancers	Primary B cells from cord blood	blood
29	chr6:5725000-5730000	Enhancers	Primary B cells from peripheral blood	blood
30	chr6:5725000-5731600	Weak transcription	Colonic Mucosa	Colon
31	chr6:5725000-5737000	Weak transcription	Primary T cells from cord blood	blood
32	chr6:5725200-5749200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr6:5725600-5727000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr6:5725600-5727200	Weak transcription	GM12878-XiMat	blood
35	chr6:5726000-5749400	Weak transcription	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links