Variant report

Variant	rs1926245
Chromosome Location	chr1:92091481-92091482
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:92081027..92084138-chr1:92090096..92093775,3	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10874846	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10874847	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10874848	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1115850	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11165102	0.92[CEU][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11165106	0.82[AMR][1000 genomes]
rs11165107	0.82[AMR][1000 genomes]
rs12039658	0.89[AMR][1000 genomes]
rs12088319	0.92[CEU][hapmap]
rs12133749	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1887040	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1887041	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1926246	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1926247	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2104501	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2478161	0.82[EUR][1000 genomes]
rs28871339	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4658105	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4658248	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57939202	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58111963	0.80[AMR][1000 genomes]
rs59212605	0.81[EUR][1000 genomes]
rs59426672	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs60040171	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs60516325	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61681651	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949516	chr1:91644418-92109261	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1009560	chr1:91897078-92270781	Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1012864	chr1:92067100-92827761	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv535029	chr1:92067100-92827761	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	esv2763581	chr1:92068967-92203803	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv1014990	chr1:92084142-92206674	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:92084000-92103200	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr1:92088800-92091600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr1:92091000-92092200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links