Variant report

Variant	rs192661469
Chromosome Location	chr19:18939992-18939993
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:18939991-18940041	HCF	heart:	n/a
2	chr19:18939991-18940041	H1-hESC	embryonic stem cell:	embryo
3	chr19:18939991-18940041	HepG2	liver:	n/a
4	chr19:18939991-18940041	HCPEpiC	choroid plexus:	n/a
5	chr19:18939991-18940041	HIPEpiC	eye:	n/a
6	chr19:18939991-18940041	HMEC	breast:	n/a
7	chr19:18939991-18940041	ProgFib	skin:	n/a
8	chr19:18939991-18940041	SK-N-SH	brain:	n/a
9	chr19:18939991-18940041	ovcar-3	ovarian:	n/a
10	chr19:18939991-18940041	PFSK-1	brain:	n/a
11	chr19:18939991-18940041	HNPCEpiC	eye:	n/a
12	chr19:18939991-18940041	AG04450	lung:	fetal
13	chr19:18939991-18940041	K562	blood:	n/a
14	chr19:18939991-18940041	BE2_C	brain:	n/a
15	chr19:18939991-18940041	MCF10A-Er-Src	breast:	n/a
16	chr19:18939991-18940041	NB4	blood:	n/a
17	chr19:18939991-18940041	HEK293	kidney:	embryo
18	chr19:18939991-18940041	SAEC	small airway:	n/a
19	chr19:18939991-18940041	HCM	heart:	n/a
20	chr19:18939991-18940041	HUVEC	blood vessel:	n/a
21	chr19:18939991-18940041	SK-N-MC	brain:	n/a
22	chr19:18939991-18940041	HRCEpiC	kidney:	n/a
23	chr19:18939991-18940041	U87	brain:	n/a
24	chr19:18939991-18940041	IMR90	lung:	fetal
25	chr19:18939991-18940041	HRPEpiC	eye:	n/a
26	chr19:18939991-18940041	T-47D	breast:	n/a
27	chr19:18939991-18940041	LNCaP	prostate:	n/a
28	chr19:18939991-18940041	Caco-2	colon:	n/a
29	chr19:18939991-18940041	AG09319	gingival:	n/a
30	chr19:18939991-18940041	ECC-1	luminal epithelium:	n/a
31	chr19:18939991-18940041	HAEpiC	amniotic membrane:	n/a
32	chr19:18939991-18940041	PANC-1	pancreas:	n/a
33	chr19:18939991-18940041	Hepatocyte	liver:	n/a
34	chr19:18939991-18940041	NHDF-neo	bronchial:	n/a
35	chr19:18939991-18940041	RPTEC	kidney:	n/a
36	chr19:18939991-18940041	AG10803	skin:	n/a
37	chr19:18939991-18940041	PrEC	prostate:	n/a
38	chr19:18939991-18940041	SK-N-SH_RA	brain:	n/a
39	chr19:18939991-18940041	SKMC	muscle:	n/a
40	chr19:18939991-18940041	Jurkat	blood:	n/a
41	chr19:18939991-18940041	HRE	kidney:	n/a
42	chr19:18939991-18940041	MCF-7	breast:	n/a
43	chr19:18939991-18940041	CMK	blood:	n/a
44	chr19:18939991-18940041	AoSMC	blood vessel:	n/a
45	chr19:18939991-18940041	AG09309	skin:	n/a
46	chr19:18939991-18940041	A549	lung:	n/a
47	chr19:18939991-18940041	HL-60	blood:	n/a
48	chr19:18939991-18940041	GM12891	blood:	n/a
49	chr19:18939991-18940041	GM06990	blood:	n/a
50	chr19:18939991-18940041	NH-A	brain:	n/a

No data

Variant related genes	Relation type
UPF1	CpG island

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911293	chr19:18872917-19050957	Flanking Active TSS Genic enhancers Strong transcription Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv911294	chr19:18872917-19093619	Active TSS Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv833777	chr19:18875936-19031076	Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv911297	chr19:18928480-19077385	Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
5	nsv911298	chr19:18928480-19093619	Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
6	esv3411589	chr19:18939302-18941700	Active TSS Enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3371779	chr19:18939802-18941100	Inactive region	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv911299	chr19:18939954-18984843	Active TSS Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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