The 2.0 version of rSNPBase

Variant report

Variant rs192710965
Chromosome Location chr6:5783633-5783634
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:53 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:5753000-5786000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
2 chr6:5772800-5786800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
3 chr6:5774400-5787400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
4 chr6:5776400-5786800 Weak transcription Thymus Thymus
5 chr6:5779200-5787200 Weak transcription Primary B cells from cord blood blood
6 chr6:5779600-5786600 Weak transcription Primary T cells from cord blood blood
7 chr6:5781200-5784400 Enhancers Fetal Muscle Leg muscle
8 chr6:5781400-5784200 Enhancers Fetal Muscle Trunk muscle
9 chr6:5781600-5788000 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
10 chr6:5781800-5783800 Enhancers Left Ventricle heart
11 chr6:5781800-5786800 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
12 chr6:5782000-5784400 Enhancers Fetal Intestine Large intestine
13 chr6:5782200-5784200 Enhancers Fetal Heart heart
14 chr6:5782200-5788200 Enhancers Fetal Thymus thymus
15 chr6:5782400-5783800 Enhancers H1 Cell Line embryonic stem cell
16 chr6:5782400-5783800 Genic enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
17 chr6:5782400-5784000 Enhancers Stomach Mucosa stomach
18 chr6:5782400-5784200 Enhancers Right Ventricle heart
19 chr6:5782400-5785000 Enhancers HUES6 Cell Line embryonic stem cell
20 chr6:5782600-5783800 Enhancers iPS-18 Cell Line embryonic stem cell
21 chr6:5782600-5784000 Enhancers Fetal Brain Female brain
22 chr6:5782600-5784200 Enhancers Colonic Mucosa Colon
23 chr6:5782600-5784200 Enhancers Fetal Brain Male brain
24 chr6:5782600-5784200 Enhancers Fetal Intestine Small intestine
25 chr6:5782600-5787600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
26 chr6:5782800-5783800 Enhancers iPS-20b Cell Line embryonic stem cell
27 chr6:5782800-5783800 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
28 chr6:5782800-5783800 Enhancers Brain Germinal Matrix brain
29 chr6:5782800-5783800 Enhancers Brain Dorsolateral Prefrontal Cortex brain
30 chr6:5782800-5783800 Enhancers HSMMtube muscle
31 chr6:5782800-5784200 Enhancers Cortex derived primary cultured neurospheres brain
32 chr6:5782800-5784200 Weak transcription Small Intestine intestine
33 chr6:5782800-5784400 Enhancers Placenta Placenta
34 chr6:5782800-5784800 Enhancers ES-I3 Cell Line embryonic stem cell
35 chr6:5783000-5783800 Enhancers Brain Anterior Caudate brain
36 chr6:5783000-5783800 Enhancers Brain Inferior Temporal Lobe brain
37 chr6:5783000-5783800 Flanking Active TSS Skeletal Muscle Male skeletal muscle
38 chr6:5783200-5783800 Enhancers Psoas Muscle Psoas
39 chr6:5783200-5783800 Flanking Active TSS Rectal Mucosa Donor 29 rectum
40 chr6:5783200-5783800 Enhancers HepG2 liver
41 chr6:5783200-5784000 Flanking Active TSS Duodenum Mucosa Duodenum
42 chr6:5783200-5784200 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
43 chr6:5783400-5783800 Enhancers Brain Cingulate Gyrus brain
44 chr6:5783400-5783800 Enhancers Brain Hippocampus Middle brain
45 chr6:5783400-5784000 Flanking Active TSS Rectal Mucosa Donor 31 rectum
46 chr6:5783400-5784000 Enhancers Skeletal Muscle Female skeletal muscle
47 chr6:5783400-5784200 Enhancers Stomach Smooth Muscle stomach
48 chr6:5783400-5785000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
49 chr6:5783600-5784000 Weak transcription Right Atrium heart
50 chr6:5783600-5784800 Weak transcription ES-WA7 Cell Line embryonic stem cell

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Last update: Aug 31, 2015